Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq1 607 1e-168 >seq1 Length=146306 Score = 607 bits (672), Expect = 1e-168 Identities = 723/975 (74%), Gaps = 8/975 (1%) Strand=Plus/Plus Query 181815 ACCAACAATCGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCG 181874 ||| | || || || || |||| ||||||||||| |||||||||| || | ||| | Sbjct 87888 ACCGAAAACCGCCTTTACATCGGGTGGTTTGGTGTTTTGATGATCCCTACATTATTGACT 87947 Query 181875 GCAACCATCTGT-TTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTAT 181933 ||||| ||||| || || | || ||| | || || ||||| || ||||| || ||||| Sbjct 87948 GCAACT-TCTGTATTTATTATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTAT 88006 Query 181934 CCGCGAACCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGT 181993 || ||||| || |||| || || | || || ||||| || || |||||||| || | Sbjct 88007 TCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCCATTAT 88066 Query 181994 CCCATCCTCCAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGA 182053 || | || || || || | ||||| || ||||| |||||||| || || |||| Sbjct 88067 TCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATATGGGAAGCAGCATCTGTTGA 88126 Query 182054 TGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCAT 182113 ||||||| | || || |||||||||| | || ||||| | |||||| | | || | Sbjct 88127 TGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGG--T 88184 Query 182114 CTACGCCT---ACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTG 182170 || || | | ||||| ||||||||||||||| || ||| | ||||||||||| || Sbjct 88185 GTA-GCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTG 88243 Query 182171 GATCTGTGTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCC 182230 ||| ||| ||||| || ||||| || || || || |||| || ||||| |||| || Sbjct 88244 GATTGCTGTTGCATATTCAGCTCCGGTTGCGGCGGCTACTGCGGTTTTCTTGATCTACCC 88303 Query 182231 TTTCGGTCAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTA 182290 |||||||||| || || |||| ||||| || ||||| || || || ||||||| Sbjct 88304 AATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTT 88363 Query 182291 TATGTTGGTTTTCCAAGCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGT 182350 ||| | || ||||| |||||||||||||| |||||||| || || |||||||||||||| Sbjct 88364 CATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGT 88423 Query 182351 AGCAGGTGTATTCGGTGGTTCACTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCTTC 182410 ||| ||||||||||| || || || |||||||| ||||| ||||| ||||| || ||| Sbjct 88424 AGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAG 88483 Query 182411 ACTCGTCCGTGAGACGACTGAGCAAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGA 182470 | || | || || || || | || || || | ||||||| ||||||||||| Sbjct 88484 TTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGA 88543 Query 182471 AGAAGAGACCTATAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATA 182530 ||||| || ||||| ||||| || || ||||| || || ||||| || ||||||||||| Sbjct 88544 GGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGTCGATTAATCTTCCAATA 88603 Query 182531 CGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGG 182590 || ||||| || || ||||| || ||||||||| | ||||| ||||| || || || Sbjct 88604 TGCTAGTTTCAATAATTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCGGTAGTAGG 88663 Query 182591 AATCTGGTTCACCGCACTTGGTGTCTCCACGATGGCATTCAACCTCAACGGTTTCAACTT 182650 || ||||| || || | ||| | ||| ||||| |||||| | || |||||||| || Sbjct 88664 TATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCGTTCAACTTAAATGGTTTCAATTT 88723 Query 182651 CAACCAGTCCATCCTTGATGGTCAGGGTCGTGTCCTTAACACTTGGGCAGATGTATTGAA 182710 |||||| || | ||||| |||| |||||||| |||| |||||||| ||| | | || Sbjct 88724 CAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATCATTAA 88783 Query 182711 CCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTAGA 182770 ||||||| ||||||||||||||||||||||| ||||| || || |||||||| ||||| Sbjct 88784 CCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGA 88843 Query 182771 TCTTGCTGCTGCTGA 182785 | ||||||| ||| Sbjct 88844 CTTAGCTGCTGTTGA 88858 Score = 562 bits (622), Expect = 4e-155 Identities = 740/1022 (72%), Gaps = 4/1022 (0%) Strand=Plus/Minus Query 183180 GTTCGATGTCCTTGATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCTGG 183239 ||| ||| | | ||||||||| | | || || || || ||||| || |||||||| Sbjct 58152 GTTTGATATTATGGATGACTGGTTACGTAGAGACCGTTTCGTTTTTGTAGGTTGGTCTGG 58093 Query 183240 ACTCCTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTT 183299 || | || |||| ||||||| | || | || |||||| |||| || || | || Sbjct 58092 TCTATTGCTCTTTCCTTGTGCTTATTTCGCTGTAGGGGGTTGGTTTACGGGTACGACGTT 58033 Query 183300 TGTTACGAGTTGGTATACCCATGGACTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTC 183358 ||| ||| |||||||||||||| | || ||||||| | ||||| ||| | |||| Sbjct 58032 TGTAACGTCATGGTATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGCAA--TTTC 57975 Query 183359 TTA-CGGCAGCTGTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGG 183417 ||| | ||||| || || || |||||| | | | | || ||| | |||| || ||| Sbjct 57974 TTAACCGCAGCCGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTGCTGTGG 57915 Query 183418 GGTCCTGAGTCTCAAGGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTT 183477 |||||||| | ||||| || ||| || ||||| ||| | || || || |||| |||| Sbjct 57914 GGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTT 57855 Query 183478 GTGGCACTCCACGGTGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCT 183537 || || || || || || || | || || ||||| ||| | || || || ||||||||| Sbjct 57854 GTTGCTCTTCATGGCGCTTTCGGACTAATAGGTTTTATGTTACGCCAATTCGAACTTGCT 57795 Query 183538 CGCTTGATTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTT 183597 || | || | || ||||| ||||| || || |||||||| || |||||||||||| Sbjct 57794 CGATCTGTTCAATTGCGCCCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTTT 57735 Query 183598 GTCAGTGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTC 183657 || ||||||||| || |||||||| || |||||| ||||||||||| |||||||| Sbjct 57734 GTTTCTGTATTCCTAATTTATCCACTAGGCCAGTCTGGTTGGTTCTTTGCGCCTAGTTTT 57675 Query 183658 GGGGTAGCAGCAATCTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTA 183717 || |||||||| || || ||||| | | || |||| || || || || |||||| | Sbjct 57674 GGTGTAGCAGCCATATTCCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGCTG 57615 Query 183718 AACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATC 183777 ||||| || ||||||||||| ||||||||| || | || | || || || ||||||| Sbjct 57614 AACCCTTTTCATATGATGGGGGTTGCTGGTGTATTGGGCGCCGCTCTGCTATGTGCTATT 57555 Query 183778 CATGGTGTCACAGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAAG 183837 ||||||| || ||||| ||||| || | ||||||||| || ||||| |||||| | Sbjct 57554 CATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGGGCAAATACATTCCGG 57495 Query 183838 GCATTTGATTCCACTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGG 183897 || ||| | | || |||| || || || ||||| ||||| || || || ||||| ||| Sbjct 57494 GCTTTTAACCCAACCCAAGCTGAGGAAACTTATTCAATGGTCACCGCTAACCGTTTTTGG 57435 Query 183898 TCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTT 183957 || |||||||| |||||||| ||| |||||| |||||||| || ||||||||||| ||| Sbjct 57434 TCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 57375 Query 183958 GTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTGCTCTTAATCTT 184017 || || || | ||| | ||| | | || |||| | | || || || | || || Sbjct 57374 GTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACCTA 57315 Query 184018 CGTGCTTATGATTTTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACG 184077 ||||| ||||| || || || || ||| | ||||| |||||||| ||||||||||| Sbjct 57314 CGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCCGAAGATCCTGAATTTGAGACT 57255 Query 184078 TTCTACACAAAGAACATACTTCTTAATGAAGGACTACGTGCATGGTTAGCACCTTCTGAT 184137 |||||||| || || || || | || ||||| | ||||| ||| | || || ||| Sbjct 57254 TTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGAT 57195 Query 184138 CAACCACATGAGAATTTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATGCTCTTTGA 184197 || || ||||| || ||||||| || |||||||| |||| | || || ||||||| | Sbjct 57194 CAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAA 57135 Query 184198 TG 184199 || Sbjct 57134 TG 57133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 609343111336000