Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq1 641 4e-179 seq235273 84.2 2e-11 seq63167 82.4 9e-11 seq28587 82.4 9e-11 seq28251 82.4 9e-11 seq6264 82.4 9e-11 >seq1 Length=146306 Score = 641 bits (710), Expect = 4e-179 Identities = 725/969 (75%), Gaps = 2/969 (0%) Strand=Plus/Plus Query 164784 CACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCCCTGTTTGCTCGC 164843 |||| | ||||| ||||| |||| ||||| |||||| | |||||||| || | | Sbjct 87887 CACCGAAAACCGCCTTTACATCGGGTGGTTTGGTGTTTTGATGATCCCTACATTATTGAC 87946 Query 164844 CGCTACAATTTGT-TTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTA 164902 || || | ||| ||||||| || ||||| |||||||| || || || |||||||||| Sbjct 87947 TGCAACT-TCTGTATTTATTATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTA 88005 Query 164903 TTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCG 164962 ||||||||||||| | || |||||| | ||||| ||||| || || |||||||| | Sbjct 88006 TTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCCATTA 88065 Query 164963 TTCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGG 165022 |||| ||||| || || || | ||||| ||||| || |||||||| ||| | | | Sbjct 88066 TTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATATGGGAAGCAGCATCTGTTG 88125 Query 165023 ATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTG 165082 |||| ||||| ||||| ||||||||||| || | |||| | |||||| | | |||| Sbjct 88126 ATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTG 88185 Query 165083 TAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGA 165142 ||||||| || |||||||||||||||||||| || ||| || |||||||||||||||| Sbjct 88186 TAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGA 88245 Query 165143 TTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTT 165202 || || |||||| || || || || || ||| | || |||||| || |||| || Sbjct 88246 TTGCTGTTGCATATTCAGCTCCGGTTGCGGCGGCTACTGCGGTTTTCTTGATCTACCCAA 88305 Query 165203 TCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATA 165262 |||||||||| ||||| ||||||||||||||||| || || ||||||||||| |||| | Sbjct 88306 TCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCA 88365 Query 165263 TGTTCGTCTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTG 165322 || | || ||||| || || || ||||| |||||||| || || |||||| | || || | Sbjct 88366 TGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAG 88425 Query 165323 CTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTTGTTACTTCCTCAC 165382 |||| |||||||| || || || || |||||||||||| | || ||||| Sbjct 88426 CTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTT 88485 Query 165383 TCGTCCGCGAGACAACTGAAACAGAGAGTCAGAACTACGGTTATAAGTTTGGACAAGAAG 165442 | || | || || || |||| || | || | ||||| | || || ||||| | Sbjct 88486 TGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGG 88545 Query 165443 AAGAGACCTATAACATCGTCGCTGCCCACGGGTACTTCGGTCGTCTCATTTTCCAATACG 165502 |||| || ||||| ||||| ||||| || || || || ||||| | || |||||||| | Sbjct 88546 AAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGTCGATTAATCTTCCAATATG 88605 Query 165503 CATCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGTA 165562 | ||||| ||||| ||||| | ||||||||| | || || ||||| ||||| |||| Sbjct 88606 CTAGTTTCAATAATTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCGGTAGTAGGTA 88665 Query 165563 TCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCA 165622 | ||||| |||||| | ||| ||||||| ||||| |||||| | || |||||||| |||| Sbjct 88666 TTTGGTTTACTGCTTTAGGTATTAGCACTATGGCGTTCAACTTAAATGGTTTCAATTTCA 88725 Query 165623 ACCAGTCTATTGTTGATAGTCAGAACAAAATCATCCCTACTTGGGCTGACGTTCTGAACC 165682 |||| ||| | ||||||||||| | || |||||||||||| | | |||| Sbjct 88726 ACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATCATTAACC 88785 Query 165683 GTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTTCCCCCTCGACC 165742 ||||| || |||||||||||||||||||| ||||| ||||| |||||||| || ||| Sbjct 88786 GTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACT 88845 Query 165743 TCGCTGCTG 165751 | ||||||| Sbjct 88846 TAGCTGCTG 88854 Score = 563 bits (624), Expect = 1e-155 Identities = 724/992 (73%), Gaps = 6/992 (1%) Strand=Plus/Minus Query 166189 GAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTG 166248 |||| |||||||||||||| ||||||||||| || | || |||| ||||||| | | Sbjct 58123 GAGACCGTTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCTTATTTCG 58064 Query 166249 CTATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGGTATACTCATGGACTCG 166308 || | || |||||| | || || || || || || ||| |||||||| ||||| | | Sbjct 58063 CTGTAGGGGGTTGGTTTACGGGTACGACGTTTGTAACGTCATGGTATACCCATGGGTTGG 58004 Query 166309 CAAGCAGTTATCTGGAGGG-TGCAAACTTTCTTA-CTGCGGCAGTTTCTACTCCAGCAGA 166366 | || ||| |||| || ||||| ||||||| | || || ||||||||||| || | Sbjct 58003 CCAGTTCCTATTTGGAAGGCTGCAA--TTTCTTAACCGCAGCCGTTTCTACTCCTGCTAA 57946 Query 166367 TGCTATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAG 166426 | | | | || ||| | | | || ||||||||||| || ||||| ||||| | Sbjct 57945 TAGTTTAGCACACTCTTTGTTGTTGCTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCG 57886 Query 166427 GTGGTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAAT 166486 ||||| ||| | || || || ||| | ||||||||||| || || ||||| | ||||| Sbjct 57885 TTGGTGTCAATTAGGCGGCCTGTGGACTTTTGTTGCTCTTCATGGCGCTTTCGGACTAAT 57826 Query 166487 TGGTTTCATGCTTCGGCAGTTTGAAATCGCTCG-TCTAGTAGGTATTCGTCCGTACAATG 166545 ||||| ||| | || || || ||| | ||||| ||| | | | || || || |||| Sbjct 57825 AGGTTTTATGTTACGCCAATTCGAACTTGCTCGATCTGTTCAAT-TGCGCCCTTATAATG 57767 Query 166546 CAATCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGG 166605 ||||||| || ||||| || |||||||| || ||| ||| || || || || || || | Sbjct 57766 CAATCGCATTCTCTGGCCCAATTGCTGTTTTTGTTTCTGTATTCCTAATTTATCCACTAG 57707 Query 166606 GTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCC 166665 | || || ||||||| || || || ||| || || |||| || ||||||||| ||| Sbjct 57706 GCCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCCATATTCCGATTCATCC 57647 Query 166666 TTTTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGGTGTAGCAG 166725 | || ||||||| || || || ||||| |||||||| |||||||||||||| || || | Sbjct 57646 TCTTTTTTCAAGGGTTTCATAATTGGACGCTGAACCCTTTTCATATGATGGGGGTTGCTG 57587 Query 166726 GTATTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGT 166785 || | | || | || |||| | ||| || ||||||| ||| ||||| || ||| | | Sbjct 57586 GTGTATTGGGCGCCGCTCTGCTATGTGCTATTCATGGTGCTACCGTAGAAAATACTTTAT 57527 Query 166786 ATCAAGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAA 166845 | |||||||||| ||||||||| ||| ||| || || | || |||| || |||| Sbjct 57526 TTGAAGATGGTGATGGGGCAAATACATTCCGGGCTTTTAACCCAACCCAAGCTGAGGAAA 57467 Query 166846 CCTATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTA 166905 | ||||||||||| || || ||||| | |||||| || ||||| || |||| ||| | Sbjct 57466 CTTATTCAATGGTCACCGCTAACCGTTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCA 57407 Query 166906 ATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTT 166965 |||| | ||||| |||||||||||| | ||||| || || | ||| | |||| ||| Sbjct 57406 ATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTG 57347 Query 166966 CCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAAC 167025 | | || | | ||||| || | ||||| ||||| |||||||| |||||||| ||| Sbjct 57346 CTCTTGGGGTAGTCGGTCTGGCCTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAA 57287 Query 167026 TAAGGGCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAATG 167085 | | ||||| || |||||||| ||||| || ||||| ||||| || |||||||| || | Sbjct 57286 TCCGTGCAGCCGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAACG 57227 Query 167086 AGGGTATGCGTTCTTGGATGGCAACTATCGATCAACCTCATGAGAGTTTCGTATTCCCTG 167145 | ||||| ||| |||||||||| || ||||| |||||||| | | ||||||||| Sbjct 57226 AAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTG 57167 Query 167146 AAGAGGTTCTTCCTAGAGGTAACGCTCTCTAA 167177 | |||||||| || | || |||||||| ||| Sbjct 57166 AGGAGGTTCTACCCCGTGGAAACGCTCTTTAA 57135 >seq235273 Length=777 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 161701 GTCAGTAGCTCAGCGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGTAGGTTCGATCCC 161760 ||| ||||||||| ||||||||| ||| | |||||||| |||||||||||||| ||| Sbjct 461 GTCTGTAGCTCAGTGGATAGAGCGTCTGTTTCCTAAGCAGAAGGTCGTAGGTTCGACCCC 520 Query 161761 TACCTGACCCGTTG 161774 |||||||| ||||| Sbjct 521 TACCTGACGCGTTG 534 >seq63167 Length=2127 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 161701 GTCAGTAGCTCAGCGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGTAGGTTCGATCCC 161760 ||| ||||||||| ||||||||| ||| | |||||||| |||||||||||||| ||| Sbjct 1241 GTCTGTAGCTCAGTGGATAGAGCGTCTGTTTCCTAAGCAGAAGGTCGTAGGTTCGACCCC 1182 Query 161761 TACCTGACCCGTT 161773 |||||||| |||| Sbjct 1181 TACCTGACGCGTT 1169 >seq28587 Length=4033 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 161701 GTCAGTAGCTCAGCGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGTAGGTTCGATCCC 161760 ||| ||||||||| ||||||||| ||| | |||||||| |||||||||||||| ||| Sbjct 1480 GTCTGTAGCTCAGTGGATAGAGCGTCTGTTTCCTAAGCAGAAGGTCGTAGGTTCGACCCC 1421 Query 161761 TACCTGACCCGTT 161773 |||||||| |||| Sbjct 1420 TACCTGACGCGTT 1408 >seq28251 Length=4075 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 161701 GTCAGTAGCTCAGCGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGTAGGTTCGATCCC 161760 ||| ||||||||| ||||||||| ||| | |||||||| |||||||||||||| ||| Sbjct 347 GTCTGTAGCTCAGTGGATAGAGCGTCTGTTTCCTAAGCAGAAGGTCGTAGGTTCGACCCC 406 Query 161761 TACCTGACCCGTT 161773 |||||||| |||| Sbjct 407 TACCTGACGCGTT 419 >seq6264 Length=11904 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 161701 GTCAGTAGCTCAGCGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGTAGGTTCGATCCC 161760 ||| ||||||||| ||||||||| ||| | |||||||| |||||||||||||| ||| Sbjct 147 GTCTGTAGCTCAGTGGATAGAGCGTCTGTTTCCTAAGCAGAAGGTCGTAGGTTCGACCCC 88 Query 161761 TACCTGACCCGTT 161773 |||||||| |||| Sbjct 87 TACCTGACGCGTT 75 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561492678732800