Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq1 535 5e-147 >seq1 Length=146306 Score = 535 bits (592), Expect = 5e-147 Identities = 712/986 (72%), Gaps = 6/986 (1%) Strand=Plus/Plus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| |||| ||||| | |||||| | || | || ||||| ||||| ||||||||||| Sbjct 87876 TGGATAACCAGCACCGAAAACCGCCTTTACATCGGGTGGTTTGGTGTTTTGATGATCCC- 87934 Query 169759 TGTCTATTAGCAGCAGCAAC--CTGC-TTTATCGTTGCTTTCATCGCAGCTCCACCTGTG 169815 | |||| | ||||| ||| ||||| | || ||||| || ||||| || || Sbjct 87935 --TACATTATTGACTGCAACTTCTGTATTTATTATAGCCTTCATTGCTGCTCCTCCAGTA 87992 Query 169816 GACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATC 169875 || || ||||| || | |||||||| | || || | | || || ||||| || || Sbjct 87993 GATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATT 88052 Query 169876 TCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAA 169935 |||||||| || |||| |||| || || || | ||||| ||||| || |||||| Sbjct 88053 TCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATATGGGAA 88112 Query 169936 GCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCAC 169995 |||||| || | ||||||||||| || || |||||||||||| | || || | | ||| Sbjct 88113 GCAGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAC 88172 Query 169996 TTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGT 170055 ||| | | || | || || |||||| | |||||||||| | |||| | ||| Sbjct 88173 TTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGT 88232 Query 170056 ATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTC 170115 |||||||||||||| ||| |||||||| ||||| || | || || || || ||| Sbjct 88233 ATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCGGTTGCGGCGGCTACTGCGGTTTTC 88292 Query 170116 TTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGT 170175 || | || || ||||||| ||| ||| || || || ||||||||||| || || ||| Sbjct 88293 TTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGT 88352 Query 170176 ACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCAT 170235 || || ||||||||| | |||||||| || ||||||||||| |||||||||||||| || Sbjct 88353 ACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCAC 88412 Query 170236 ATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTT 170295 ||| || || |||||| | ||||| || | || || || ||||| ||||| | Sbjct 88413 ATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTG 88472 Query 170296 GTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAA 170355 ||||| ||| | | ||||| || || ||||| || || || || | || |||| | Sbjct 88473 GTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGA 88532 Query 170356 TTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTT 170415 ||||| ||||| |||||||| || || || || || || ||||| || |||||| || | Sbjct 88533 TTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGTCGATTA 88592 Query 170416 ATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTC 170475 ||||||||||||||||| || || ||| |||| | | ||||||||| | ||| | | Sbjct 88593 ATCTTCCAATATGCTAGTTTCAATAATTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGG 88652 Query 170476 CCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAAT 170535 || |||||| | || ||||| ||| | | |||||| |||| ||||| || ||| | ||| Sbjct 88653 CCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCGTTCAACTTAAAT 88712 Query 170536 GGATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCA 170595 || || || |||||||| || | || ||| | ||| ||| || ||| ||||| Sbjct 88713 GGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCT 88772 Query 170596 GACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAAC 170655 || | ||||| | || ||||| ||||||||||| |||||||| |||||||| || ||| Sbjct 88773 GATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAAC 88832 Query 170656 TTCCCACTTGACTTGGCAACTGCTGA 170681 ||||| || ||||| || ||| ||| Sbjct 88833 TTCCCTCTAGACTTAGCTGCTGTTGA 88858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 580606075168000