Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq1 661 0.0 >seq1 Length=146306 Score = 661 bits (732), Expect = 0.0 Identities = 732/973 (75%), Gaps = 2/973 (0%) Strand=Plus/Minus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||||||||| || |||||||| ||||| |||||||||||||| ||||| |||| Sbjct 88837 GGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTAATG 88778 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| ||||| | ||||| ||| ||||| || | | || ||||| || Sbjct 88777 ATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTACAGATTGGTTGAAATTG 88718 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| | || || ||||| ||||||| ||| | ||||| ||||||||| || || Sbjct 88717 AAACCATTTAAGTTGAACGCCATAGTGCTAATACCTAAAGCAGTAAACCAAATACCTACT 88658 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || ||||||||||| ||||| ||||| | ||||||| ||| ||||| |||||| ||| Sbjct 88657 ACCGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAATTATTGAAACTAGCATATTGG 88598 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | ||||| || || || |||||||| || |||||||||||||| || |||||| Sbjct 88597 AAGATTAATCGACCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGA 88538 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 ||||| ||||||| | || || |||||||||| ||||| | ||| | | |||| Sbjct 88537 CCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAA 88478 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | ||||||||||| ||| ||||| | || |||||||||||||| || ||| Sbjct 88477 GTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACACCC 88418 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 ||||||||||| || |||||||||||||| || || |||||||| |||| |||| ||||| Sbjct 88417 AACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTG 88358 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || || || || || || || ||||| |||||||| ||| ||||| |||| || || Sbjct 88357 AAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAG 88298 Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584 | | ||| || |||| ||||| ||||| ||||| || || |||||| ||||| ||| Sbjct 88297 ATCAAGAAAACCGCAGTAGCCGCCGCAACCGGAGCTGAATATGCAACAGCAATCCAAGGA 88238 Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATC 84644 |||||||| ||||| | ||||||||| ||||||||||| ||| | | |||||| Sbjct 88237 CGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGT 88178 Query 84645 AGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTT 84704 | |||||| | |||| || | |||||| |||||||| |||| ||| || || | | | Sbjct 88177 AAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCACTCATCAACAGAT 88118 Query 84705 GCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCA 84764 ||||||||||| || ||||| || || | || ||||| ||| | |||| | |||| Sbjct 88117 GCTGCTTCCCATATTGGATAAAAGTGCAACCCTATAGCTGCAGAAGTAGGAATAATGGCA 88058 Query 84765 CCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCA 84824 |||||||| || ||||||||||| | ||||| |||| || || ||||| ||||| ||| Sbjct 88057 CCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCA 87998 Query 84825 ATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAG 84883 ||||| ||||| || ||| ||| ||| || || || || ||||| ||| |||| | || Sbjct 87997 ATATCTACTGGAGGAGCAGCAATGAAGGCTATAATAAATACAGA-AGTTGCAGTCAATAA 87939 Query 84884 AGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGAC 84943 || || ||||| | | |||||||| || | || | ||||| | ||| ||| | Sbjct 87938 TGTAGGGATCATCAAAACACCAAACCACCCGATGTAAAGGCGGTTTTCGGTGCTGGTTAT 87879 Query 84944 CCAATCACAGAAG 84956 ||| | ||||||| Sbjct 87878 CCAGTTACAGAAG 87866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569076196097600