Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2381 122 1e-22 seq80314 96.9 4e-15 >seq2381 Length=21385 Score = 122 bits (134), Expect = 1e-22 Identities = 415/639 (65%), Gaps = 17/639 (3%) Strand=Plus/Plus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 || ||||| || |||| | || || ||||||||||| || || | | ||||| | Sbjct 13682 TTCTGATACTCCCCAACCCGCTTCTCGAAGAAATTAGTCTTCCCTTGCAGCGATATTAAC 13741 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 ||||| ||||||| || || | ||||| || | || | |||| || | || Sbjct 13742 TCCATCCAATCAAACGGGTTCGTAACATTGTAAACCTTCCCGCATCCCAACGCACCAAGC 13801 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 | |||||||| ||||| | |||||| |||||| || | ||||| || | || Sbjct 13802 AACCTATCCGCAACAAACTCAATATACTGACTCATCAACTCCCCGTTCATCCCAACCAAC 13861 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA 18909 | |||| || || || ||| || || || | || ||||| || || ||| Sbjct 13862 GCACACGGTAACGCGTCACAAACAAACTCCCTCTCGATCTCCACCGCCTCAGAAATTATA 13921 Query 18910 GATACAACTCTATCTTCATTAGGAGGGT------ATAGAAGATGTTTAAACATCAAACAT 18963 | ||||| || || | | | ||||| || || ||| ||||||| Sbjct 13922 CTTTTGACTCTCTCCTCGCTCGTCTTCTTCTTCAATAGA-GA-GTATAA----CAAACAT 13975 Query 18964 GCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCA 19023 || ||||| ||||| || || ||||||| | || || || ||||| || |||| ||| Sbjct 13976 GCGAAATCGCAATGAAGCCCTTCGTCTCGAGAAATTAACTCGTTAGAGAAGGTTAGTCCA 14035 Query 19024 GGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA-AATGATCCAGAAAAGAATAT 19082 ||||| | || | ||||| | ||||||||||| ||| || |||||| |||||||| Sbjct 14036 GGCATTAAACCACGCTTTTTCAGCCAGAATATAG-CGCAGAAGCTTCCAGAGAAGAATAT 14094 Query 19083 ACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAAT 19142 ||||| || ||||| |||| || || ||| || ||| | || | || || Sbjct 14095 CCCTTCAACACAAGCAAATGCAATTATTCGCTCTGCA-AAC--GATTCCGAACCGTGTAT 14151 Query 19143 CCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAA 19202 ||| | |||||||||||||| || ||| || || || || | || | ||| Sbjct 14152 CCAGCGTAAGGCCCAATCAGCCTTACGCTTGACAGTCGGAATCGTTTCCAGAGCACGAAA 14211 Query 19203 TAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTC 19262 ||| | ||| | | ||||| || ||| | ||| | | | | |||||||| Sbjct 14212 GAGACTCGACTTTTCAGCGGAATCTTGAATATAGGTATCAAGAAGGAGAGAATACATTTC 14271 Query 19263 TGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAA 19301 |||||||| ||||| ||||| || || || |||||||| Sbjct 14272 GGAATGAATGTTTTCGATAGCAATTTGGAAACCGTAAAA 14310 >seq80314 Length=1716 Score = 96.9 bits (106), Expect = 4e-15 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 18957 CAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGT 19016 |||||| || ||||| ||||| || || ||||||| | || || |||||||| || || Sbjct 974 CAAACACGCGAAATCGCAATGAAGCCCTTCGTCTCGAGAAATTAACTCATTAGAGAAGGT 915 Query 19017 TAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAA 19076 || |||||||| | |||| ||||| | ||||||||||| | || |||||| || Sbjct 914 TAGTCCAGGCATTAAACCTCGCTTTTTCAGCCAGAATATAGCACATAAACTTCCAGAGAA 855 Query 19077 GAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCA 19119 ||||| ||||| || ||||| |||| || || ||| || Sbjct 854 GAATACTCCTTCAACACAAGCAAATGCAATTATTCGCTCTGCA 812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559946648500800