Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq1 477 3e-130 >seq1 Length=146306 Score = 477 bits (528), Expect = 3e-130 Identities = 700/985 (71%), Gaps = 4/985 (0%) Strand=Plus/Plus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 || ||| | ||| | || || || || ||||| || || | || ||||| || || | Sbjct 87867 TTCTGTAACTGGATAACCAGCACCGAAAACCGCCTTTACATCGGGTGGTTTGGTGTTTTG 87926 Query 25862 ATGATACCCTGC-TTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCAC 25919 ||||| |||| | ||| | | || ||| | ||| ||||| | |||||||| || || | Sbjct 87927 ATGAT-CCCTACATTATTGACTGCAACTTC-TGTATTTATTATAGCCTTCATTGCTGCTC 87984 Query 25920 CGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACA 25979 | || |||||||| ||||| || ||||| || ||||| || || || | |||||||||| Sbjct 87985 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACA 88044 Query 25980 ATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGA 26039 |||| || || || || | | || | ||| || || || | || ||||| || | Sbjct 88045 ATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAA 88104 Query 26040 TCTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTA 26099 | |||||||| | | | || |||||| |||||||||| || || ||| | || ||| Sbjct 88105 TATGGGAAGCAGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTG 88164 Query 26100 TCTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACA 26159 | | ||||||||| | || ||||| ||| || | |||||||||| || | Sbjct 88165 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 88224 Query 26160 GACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCG 26219 | || || ||| | || ||||| |||||||||| |||| || | | || ||| | Sbjct 88225 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCGGTTGCGGCGGCTACTG 88284 Query 26220 CAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTA 26279 | || ||||| | || || |||| ||||| |||||| |||||| |||||||| || | Sbjct 88285 CGGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 88344 Query 26280 TCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACC 26339 | ||||||||||| ||||| ||| | |||||||| || || || || || || ||||||| Sbjct 88345 TTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 88404 Query 26340 CATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACG 26399 |||| || ||| ||||| ||||| || ||||| || | || || ||||||||| | Sbjct 88405 CATTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATG 88464 Query 26400 GAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATG 26459 | ||||| ||||| | || ||||| ||||| | | || ||| | | Sbjct 88465 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 88524 Query 26460 GCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTG 26519 | || | || || ||||| ||||| || |||||||| || ||||| || || || |||| Sbjct 88525 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTG 88584 Query 26520 GGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTG 26579 | ||||||| || || ||||| ||||| ||||| |||||| | || ||||| | | Sbjct 88585 GTCGATTAATCTTCCAATATGCTAGTTTCAATAATTCTCGTTCTTTACACTTCTTCTTAG 88644 Query 26580 CTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTA 26639 || |||||||||| || || || ||| | || || | ||||| |||| ||||| || | Sbjct 88645 CTGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCGTTCA 88704 Query 26640 ACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTA 26699 || |||||||||| || || ||||| || ||||| ||| | | || |||| || Sbjct 88705 ACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATA 88764 Query 26700 CATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATG 26759 | ||||||||| | | ||||| |||||||| || | ||||||||||| || ||||||| Sbjct 88765 CTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 88824 Query 26760 CTCATAACTTTCCACTTGACTTAGC 26784 |||||||||| || || |||||||| Sbjct 88825 CTCATAACTTCCCTCTAGACTTAGC 88849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146190236057280