Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq1 585 8e-163 >seq1 Length=146306 Score = 585 bits (648), Expect = 8e-163 Identities = 727/993 (73%), Gaps = 2/993 (0%) Strand=Plus/Minus Query 5186 TCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATA 5245 ||| |||| |||| || || |||||||| |||||||| ||||| ||||| ||||||||| Sbjct 88858 TCAACAGCAGCTAAGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 88799 Query 5246 CCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCA 5305 |||||||| |||||||| | || ||| |||||||| || | | ||| | ||| Sbjct 88798 CCAAGGTTAGCACGGTTAATGATATCAGCCCAAGTATTAATTACACGACCTTGACTATCA 88739 Query 5306 ACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATA 5365 || || || || ||||| || || || || | || || ||||||||| || || | | Sbjct 88738 ACTACAGATTGGTTGAAATTGAAACCATTTAAGTTGAACGCCATAGTGCTAATACCTAAA 88679 Query 5366 GAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTA 5425 | |||| ||| || | || || ||||||| ||| | |||||| |||||| ||| | Sbjct 88678 GCAGTAAACCAAATACCTACTACCGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAA 88619 Query 5426 TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 5485 || || || |||||||| |||||||| | || ||||| || |||||||| || || || Sbjct 88618 TTATTGAAACTAGCATATTGGAAGATTAATCGACCAAAATAACCATGAGCAGCTACGATA 88559 Query 5486 TTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTT 5545 ||||| |||||||||||||| |||||| | || || | || ||| | | || Sbjct 88558 TTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 88499 Query 5546 GTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCA 5605 ||||| | || | |||||| || | |||||||||||| || | | || Sbjct 88498 GTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCG 88439 Query 5606 CCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCC 5665 |||||||| ||||| ||||| | |||||| || || ||||||||||| ||||| || ||| Sbjct 88438 CCGAATACACCAGCTACACCCAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCC 88379 Query 5666 TGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAA 5725 |||||||| | ||| ||||| ||||||||||| || || ||||||||||||||| ||| Sbjct 88378 TGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAA 88319 Query 5726 CTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGA 5784 ||||| || |||| ||||| | || || || | ||||| | || |||||||| ||||| Sbjct 88318 CTTCCTTGACCGATTGGGTAGATCAAGAAAACCGCAGTAGCC-GCCGCAACCGGAGCTGA 88260 Query 5785 ATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCC 5844 |||||| || |||||| || ||||| || | | | ||||||||||||| | || || Sbjct 88259 ATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACC 88200 Query 5845 CAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATT 5904 || ||| || | ||||| | |||||| | || | || | || || || ||||| Sbjct 88199 CATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATT 88140 Query 5905 GTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGC 5964 ||| | ||| ||||| | | ||||||||||| || ||||| ||||| ||||| || || Sbjct 88139 GTATAACCACTCATCAACAGATGCTGCTTCCCATATTGGATAAAAGTGCAACCCTATAGC 88080 Query 5965 GTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGC 6024 || | || | || ||| || || || || |||||||| || ||||||||||| | Sbjct 88079 TGCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGA 88020 Query 6025 GACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAA 6084 || |||||||| || || || || || ||||| || ||||| | ||| |||| ||||| Sbjct 88019 AACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCTATAATAAA 87960 Query 6085 TGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAG 6144 | ||| |||||| || || | || || ||||| || |||||||||||||| | || || Sbjct 87959 TACAGAAGTTGCAGTCAATAATGTAGGGATCATCAAAACACCAAACCACCCGATGTAAAG 87900 Query 6145 GCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 |||||| | |||||| || | ||||| |||||| Sbjct 87899 GCGGTTTTCGGTGCTGGTTATCCAGTTACAGAA 87867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152091791647920