Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq2381 105 8e-18 seq100015 102 1e-16 seq80314 102 1e-16 >seq2381 Length=21385 Score = 105 bits (116), Expect = 8e-18 Identities = 115/150 (77%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 37170 AATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAG 37229 || |||||||| ||||| ||||| | ||||| |||| | || || || ||||| ||| Sbjct 13967 AACAAACATGCGAAATCGCAATGAAGCCCTTCGTCTCGAGAAATTAACTCGTTAGAGAAG 14026 Query 37230 GTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAG-ATCCAGA 37288 |||| ||| ||||||||||| | ||||| | ||| ||||| || ||| ||| |||||| Sbjct 14027 GTTAGTCCAGGCATTAAACCACGCTTTTTCAGCCAGAATATAGC-GCAGAAGCTTCCAGA 14085 Query 37289 AAAGAAAATACCTTCAACTGCTGCAAATGC 37318 ||||| || |||||||| |||||||| Sbjct 14086 GAAGAATATCCCTTCAACACAAGCAAATGC 14115 >seq100015 Length=1511 Score = 102 bits (112), Expect = 1e-16 Identities = 108/140 (77%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 37168 ACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAA 37227 |||| ||||| || || ||||| ||||| || || |||| | ||||| || || || | Sbjct 1220 ACAACAAACAGGCGAAGTCACAGTGTAATCCCTCGTCTCGAGAAATCAACTCGTTCGAGA 1279 Query 37228 AGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAG-ATCCA 37286 |||| | ||||||||||| |||| ||| || | ||||||||| || ||| ||| |||| Sbjct 1280 AGGTAAGCCCTGGCATTAACCCTCGTTTCTTGAGCCAAAATATCGC-GCAGAAGCTTCCA 1338 Query 37287 GAAAAGAAAATACCTTCAAC 37306 || ||||| || |||||||| Sbjct 1339 GAGAAGAATATCCCTTCAAC 1358 >seq80314 Length=1716 Score = 102 bits (112), Expect = 1e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 37170 AATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAG 37229 || ||||| || ||||| ||||| | ||||| |||| | || || |||||||| ||| Sbjct 976 AACAAACACGCGAAATCGCAATGAAGCCCTTCGTCTCGAGAAATTAACTCATTAGAGAAG 917 Query 37230 GTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAA 37289 |||| ||| ||||||||||||| ||||| | ||| ||||| || ||| |||||| Sbjct 916 GTTAGTCCAGGCATTAAACCTCGCTTTTTCAGCCAGAATATAGCACATAAACTTCCAGAG 857 Query 37290 AAGAAAATACCTTCAACTGCTGCAAATGC 37318 ||||| | |||||||| |||||||| Sbjct 856 AAGAATACTCCTTCAACACAAGCAAATGC 828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590038453428800