Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq2708 86.0 1e-11 >seq2708 Length=28076 Score = 86.0 bits (94), Expect = 1e-11 Identities = 193/284 (68%), Gaps = 7/284 (2%) Strand=Plus/Minus Query 150379 AACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAAAACACAAATCGTTGA 150438 |||||| || || || ||| | || || || ||||| ||||| || | ||||| Sbjct 3361 AACCAAGAACAACCCTGTGTTGATCGGGGAGCCGGGTGTAGGTAAGACTGCTGTGGTTGA 3302 Query 150439 CGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTATGAAAGATGTTGAAAT 150498 || || || ||| | || | || |||||||||||| | | || ||||| | Sbjct 3301 AGGCTTGGCTCAAAGAATTGTTAGTGGTGATGTTCCGAGTAATTTGGCCGATGTGAGGCT 3242 Query 150499 TCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCGTGGTGAATTCGAAGA 150558 | |||||||| ||||||| || | ||||| ||||||||| | |||||||| || || Sbjct 3241 TATTTCTTTGGATATGGGGGCTCTGGTGGCTGGAACTAAGTATAGGGGTGAATTTGAGGA 3182 Query 150559 ACGTGTAGACAAT--TTGCTACAAGAACTAAAAGAA-CGCGATG--ATGTTATTCTGTTC 150613 | || || ||| ||||| |||| | ||||| | | | | | || || ||||| Sbjct 3181 GAG-GTTGA-AATCCGTGCTAAAAGAGGTGGAAGAAGCTCAAGGAAAGGTGATCTTGTTC 3124 Query 150614 ATCGATGAAATCCATACTATTATGGGTGCTGGTGCGACTGGCGG 150657 || |||||||||||| || | ||||||||| | |||| || Sbjct 3123 ATTGATGAAATCCATTTGGTTCTCGGTGCTGGTCGGGCTGGAGG 3080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1143065838364560