Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq1 614 6e-171 >seq1 Length=146306 Score = 614 bits (680), Expect = 6e-171 Identities = 721/972 (74%), Gaps = 2/972 (0%) Strand=Plus/Plus Query 8269 ACCAATAATCGCTTGTATGTCGGCTGGTTTGGCGTTCTCATGATCCCAACCCTTCTTGCC 8328 ||| | || ||| | || |||| |||||||| ||| | |||||||| || || ||| | Sbjct 87888 ACCGAAAACCGCCTTTACATCGGGTGGTTTGGTGTTTTGATGATCCCTACA-TTATTGAC 87946 Query 8329 -GCTACAATTTGCTTCATTACCGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCAT 8387 || || | || |||| || ||| ||||||||||||| || || || || || || Sbjct 87947 TGCAACTTCTGTATTTATTATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTAT 88006 Query 8388 CCGCGAACCAGTTGCTGGATCTCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGT 8447 || ||||| ||| |||||||||| | ||||| ||||| || || |||||||| || | Sbjct 88007 TCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCCATTAT 88066 Query 8448 TCCCAGCTCTAACGCAATTGGCCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGA 8507 ||| | ||| || || || | ||||| || || || |||||||| || ||| |||| Sbjct 88067 TCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATATGGGAAGCAGCATCTGTTGA 88126 Query 8508 TGAGTGGCTCTACAACGGTGGTCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGT 8567 ||||||| | ||||| ||||||||||| |||| | ||| | |||||| | ||||| || Sbjct 88127 TGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT 88186 Query 8568 CTTTGCTTATATGGGTCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGAT 8627 | ||||||||||||||| ||||||||| || ||| || || |||||||||||||| Sbjct 88187 AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT 88246 Query 8628 CTGTGTTGCATACTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTT 8687 ||||||||| || ||||| ||||| || ||| |||| || ||| | |||| || | Sbjct 88247 TGCTGTTGCATATTCAGCTCCGGTTGCGGCGGCTACTGCGGTTTTCTTGATCTACCCAAT 88306 Query 8688 TGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATAT 8747 |||||||| || ||||||||||||||||| || || || ||||| ||||||| || Sbjct 88307 CGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCAT 88366 Query 8748 GCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGC 8807 | |||| ||||||||||||||||||||||| |||||||| || |||||| | ||||| || Sbjct 88367 GATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAGC 88426 Query 8808 TGGTGTCTTCGGCGGATCTCTCTTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGCT 8867 |||||| |||||||| || || ||| || ||||||||||| | || |||||| | Sbjct 88427 TGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTT 88486 Query 8868 GGTTCGTGAGACCACCGAAACCGAGTCTCAAAACTATGGCTACAAGTTCGGTCAAGAAGA 8927 | | | || ||||| |||| || ||| || | || |||| ||||||||||| || Sbjct 88487 GATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGA 88546 Query 8928 GGAAACTTACAACATTGTTGCCGCTCATGGCTACTTTGGTCGCTTGATCTTCCAATATGC 8987 |||||||| || || || || |||||||| || |||||||| || |||||||||||||| Sbjct 88547 AGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGTCGATTAATCTTCCAATATGC 88606 Query 8988 ATCTTTTAACAATTCTAGAAGCTTGCATTTCTTCCTCGCTGCGTGGCCTGTGGTGGGAAT 9047 ||| || |||||| | || || |||||| | ||||| ||||| || || || || Sbjct 88607 TAGTTTCAATAATTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCGGTAGTAGGTAT 88666 Query 9048 CTGGTTTACCGCCCTCGGCGTCTCGACCATGGCTTTCAACCTCAATGGCTTCAACTTCAA 9107 |||||||| || | || | || ||||| |||||| | ||||| ||||| ||||| Sbjct 88667 TTGGTTTACTGCTTTAGGTATTAGCACTATGGCGTTCAACTTAAATGGTTTCAATTTCAA 88726 Query 9108 CCAGTCCATTATCGACGGACAAGGACGAGTGCTCAACACCTGGGCAGACGTACTTAACCG 9167 ||| || | | || | ||||| || || | || || ||||| || | ||||||| Sbjct 88727 CCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATCATTAACCG 88786 Query 9168 CGCAGGACTCGGTATGGAAGTCATGCACGAAAGAAACGCACACAACTTCCCGCTTGACCT 9227 || || ||||||||||| ||||| ||| | || || || |||||||| || ||| | Sbjct 88787 TGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACTT 88846 Query 9228 TGCGGCTGCTGA 9239 || |||| ||| Sbjct 88847 AGCTGCTGTTGA 88858 Score = 553 bits (612), Expect = 2e-152 Identities = 724/1000 (72%), Gaps = 2/1000 (0%) Strand=Plus/Minus Query 9814 GTTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCTGG 9873 |||||| || | ||||||||| | |||| || || |||||||| ||||||||||| Sbjct 58152 GTTTGATATTATGGATGACTGGTTACGTAGAGACCGTTTCGTTTTTGTAGGTTGGTCTGG 58093 Query 9874 ACTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGTT 9933 ||| | || ||||| ||||||| | || | || || ||| |||| || || ||||| Sbjct 58092 TCTATTGCTCTTTCCTTGTGCTTATTTCGCTGTAGGGGGTTGGTTTACGGGTACGACGTT 58033 Query 9934 TGTCACGAGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGG-TGCTAATTTCC 9992 ||| ||| ||||| || || || | || ||| || | || || ||| |||||| Sbjct 58032 TGTAACGTCATGGTATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGC-AATTTCT 57974 Query 9993 TTACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGG 10052 | || || || || || || |||||| || | | | || ||| | | | || |||| Sbjct 57973 TAACCGCAGCCGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTGCTGTGGG 57914 Query 10053 GTCCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTG 10112 ||||||| | || |||||||| || ||| || | || || || ||| |||||| Sbjct 57913 GTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTTG 57854 Query 10113 TGGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGA 10172 | || || || || || |||| |||| || |||||||||||||| || || || || Sbjct 57853 TTGCTCTTCATGGCGCTTTCGGACTAATAGGTTTTATGTTACGCCAATTCGAACTTGCTC 57794 Query 10173 GATTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTG 10232 ||| || | | || ||||| ||||| ||||| || ||||| || ||||||||||||| Sbjct 57793 GATCTGTTCAATTGCGCCCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTTTG 57734 Query 10233 TCAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCG 10292 | ||| ||||| || |||||||| || |||||| |||||||||||||||| ||||| | Sbjct 57733 TTTCTGTATTCCTAATTTATCCACTAGGCCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTG 57674 Query 10293 GCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCA 10352 | || || || || ||||| ||| | ||||| | || || ||||||||||||||||| | Sbjct 57673 GTGTAGCAGCCATATTCCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGCTGA 57614 Query 10353 ATCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCC 10412 | || || ||||||||||| ||||||||| || |||| | || || |||| || || | Sbjct 57613 ACCCTTTTCATATGATGGGGGTTGCTGGTGTATTGGGCGCCGCTCTGCTATGTGCTATTC 57554 Query 10413 ACGGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAG 10472 | || | || |||||||| || | | | ||||||| || ||||| || ||| | Sbjct 57553 ATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGGGCAAATACATTCCGGG 57494 Query 10473 CTTTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGT 10532 ||||| | || |||| || || || ||||| ||||| || ||||||||||| |||| Sbjct 57493 CTTTTAACCCAACCCAAGCTGAGGAAACTTATTCAATGGTCACCGCTAACCGTTTTTGGT 57434 Query 10533 CCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTG 10592 |||| || ||||| |||||||| ||||||||| ||| | |||||||||||| | |||| Sbjct 57433 CCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTG 57374 Query 10593 TACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTC 10652 |||| || | ||| | |||| | || |||| | | ||||| || | || || | Sbjct 57373 TACCAGTAACCGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACCTAC 57314 Query 10653 GTGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACGT 10712 |||| || || || || || || || ||| | || | |||||||||||||||||||| | Sbjct 57313 GTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCCGAAGATCCTGAATTTGAGACTT 57254 Query 10713 TCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTGACC 10772 |||| || || ||||| || | ||||||||| ||||||| |||||||| | || | Sbjct 57253 TCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATC 57194 Query 10773 AACCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTTCC 10812 | || || |||| | || | ||||| || || ||||| || Sbjct 57193 AGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 57154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514493359680000