Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq11074 107 2e-18 seq20614 95.1 1e-14 seq5402 87.8 2e-12 seq60406 86.0 5e-12 seq9218 82.4 6e-11 >seq11074 Length=8391 Score = 107 bits (118), Expect = 2e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609 ||||||||| ||||| || ||||| |||| || ||||| || ||| ||| ||| | Sbjct 477 AAAAATGCAGATATTCGTGAAAACCCTAACTGGCAAAACAATAACCCTAGAAGTTGAATC 536 Query 28610 TTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 ||||| || | | | || |||| || ||| |||||||| || | || || Sbjct 537 ATCAGACACAATCGACAATGTCAAAACCAAGATCCAAGACAAAGAAGGCATCCCACCTGA 596 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 |||||| | ||||||||||| || |||||| | |||||| | ||| | |||||||| Sbjct 597 TCAACAACGTCTTATCTTTGCTGGTAAACAACTTGAAGATGGTCGTACTTTAGCCGATTA 656 Query 28730 TAACATTCAAAAAGAATCTACTCTGCA 28756 || || || |||||||||||||| || Sbjct 657 CAATATCCAGAAAGAATCTACTCTTCA 683 >seq20614 Length=5371 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/217 (70%), Gaps = 1/217 (0%) Strand=Plus/Plus Query 28541 TGATTGTGTAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGA 28600 |||||||||| | ||||||||||||| || || | || || || |||||||| ||| Sbjct 2079 TGATTGTGTAGGA-TGCAAATATTTGTCAAGACCCTTACCGGCAAGACCATTACTCTCGA 2137 Query 28601 AACGGAACCTTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGT 28660 || |||||| || | | | || ||||| || || ||||| ||||| | Sbjct 2138 GGTCGAGAGTTCAGACACCATTGACAATGTCAAGACTAAGATTCAGGACAAGGAGGGCAT 2197 Query 28661 GCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTAT 28720 || |||||| |||||||| |||||||| || || || | |||||| ||| | Sbjct 2198 TCCTCCAGATCAGCAGAGACTGATCTTTGCAGGAAAGCAGCTTGAAGATGGCCGCACTCT 2257 Query 28721 GGCCGATTATAACATTCAAAAAGAATCTACTCTGCAC 28757 || ||||||||||| ||||| || ||||| || ||| Sbjct 2258 TGCAGATTATAACATCCAAAAGGAGTCTACGCTTCAC 2294 >seq5402 Length=17369 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 28540 GTGATTGTGTAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCG 28599 || ||| ||| | |||||||| ||||| ||||| |||| || || || ||||| || Sbjct 5459 GTAATTATGTGTAGATGCAAATCTTTGTGAAAACCCTAACTGGCAAGACAATTACTCTCG 5518 Query 28600 AAACGGAACCTTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAG 28659 || || ||| || || | | | || |||| || || || || ||||| Sbjct 5519 AAGTCGAGAGTTCCGACACCATTGACAATGTCAAAACCAAGATTCAGGATAAGGAGGGCA 5578 Query 28660 TGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTA 28719 | || ||| || || ||||| |||||||| || |||||| | || ||| |||| Sbjct 5579 TTCCTCCAGACCAGCAAAGACTGATCTTTGCTGGGAAACAACTTGAGGATGGCCGAACTC 5638 Query 28720 TGGCCGATTATAACATTCAAAAAGAATCTACTCTGCAC 28757 | || |||||||||||||| ||||| ||||| || ||| Sbjct 5639 TTGCTGATTATAACATTCAGAAAGAGTCTACCCTTCAC 5676 >seq60406 Length=2202 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 28540 GTGATTGTGTAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCG 28599 || ||| ||| | |||||||| ||||| ||||| |||| || || || ||||| | Sbjct 1570 GTAATTATGTGTAGATGCAAATCTTTGTGAAAACCCTAACTGGCAAGACAATTACTCTGG 1511 Query 28600 AAACGGAACCTTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAG 28659 | || ||| || || | | | || |||| ||||| ||||| ||||| Sbjct 1510 AGGTCGAGAGTTCCGACACCATTGACAATGTCAAAACCAAAATTCAGGACAAGGAGGGCA 1451 Query 28660 TGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTA 28719 | || ||| || ||||| || ||||| || ||||| ||| | || ||| |||| Sbjct 1450 TTCCTCCAGACCAGCAGAGGCTGATCTTCGCAGGCAAGCAACTTGAGGATGGCCGAACTC 1391 Query 28720 TGGCCGATTATAACATTCAAAAAGAATCTACTCTGCA 28756 |||| |||||||||||||| ||||| || ||||| || Sbjct 1390 TGGCTGATTATAACATTCAGAAAGAGTCGACTCTTCA 1354 >seq9218 Length=18002 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| |||||||| || ||||||||||| || || || ||| ||| || || Sbjct 14657 ATGCAGATATTTGTCAAGACATTAACGGGGAAGACGATCACCTTGGAAGTCGAGAGCTCT 14598 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| || ||| ||||||||||| | ||| |||||| Sbjct 14597 GATACTATTGATAATGTGAAGACTAAGATCCAGGACAAAGAGGGCATTCCCCCAGATCAG 14538 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| | |||||||| || || || ||||| ||| ||| |||| ||||| || Sbjct 14537 CAGAGGTTGATCTTTGCAGGGAAGCAGTTGGAGGATGGGCGCACTTTGGCTGATTACAAT 14478 Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756 ||||| || ||||| || || || Sbjct 14477 ATTCAGAAGGAATCAACCCTCCA 14455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423809388425880