Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20
2015-10-23] 307,720 sequences; 665,278,925 total letters
Query= NC_020486.1
Length=171211
Score E
Sequences producing significant alignments: (Bits) Value
seq1 673 0.0
seq9259 98.7 1e-15
>seq1
Length=146306
Score = 673 bits (746), Expect = 0.0
Identities = 749/994 (75%), Gaps = 4/994 (0%)
Strand=Plus/Plus
Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935
|| ||||||||| | ||||||||||| ||||||||||| | || ||||| || || ||
Sbjct 87867 TTCTGTAACTGGATAACCAGCACCGAAAACCGCCTTTACATCGGGTGGTTTGGTGTTTTG 87926
Query 160936 ATGATTCCCTGCTTGCTCG-CTGCTACCATTTGT-TTCATCATTGCCTTCGTTGGTGCTC 160993
||||| |||| | | | | |||| || | ||| || || || |||||| ||| |||||
Sbjct 87927 ATGAT-CCCTACATTATTGACTGCAACT-TCTGTATTTATTATAGCCTTCATTGCTGCTC 87984
Query 160994 CCCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACA 161053
| || || || || || || ||||||||||| || |||| || || | || |||||||
Sbjct 87985 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACA 88044
Query 161054 ACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCA 161113
| || || |||||||| |||| ||| ||||| ||||| || ||||||| || || |
Sbjct 88045 ATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAA 88104
Query 161114 TCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTG 161173
| |||||||||||| | | || || ||| | ||||| |||||||||| | || |||
Sbjct 88105 TATGGGAAGCAGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTG 88164
Query 161174 TGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACC 161233
| | |||||| | |||| | | ||| ||||||||||||||||||||| || ||
Sbjct 88165 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 88224
Query 161234 GTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTG 161293
||||||| ||||||||||||||| || ||||| || ||||| || || || || | ||
Sbjct 88225 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCGGTTGCGGCGGCTACTG 88284
Query 161294 CAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCA 161353
| || ||| || |||| || |||||||||| ||| ||||||| |||||||| || |
Sbjct 88285 CGGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 88344
Query 161354 TCTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACC 161413
| |||||||| ||||||| |||| |||| ||||| || ||||||||||| || |||||||
Sbjct 88345 TTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 88404
Query 161414 CCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACG 161473
| || || ||| | || ||||| ||||| || ||||| || || || ||||| ||||| |
Sbjct 88405 CATTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATG 88464
Query 161474 GTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCCAGAACTATG 161533
|||| |||| || ||| || | | |||||||| ||||| || || || | |
Sbjct 88465 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 88524
Query 161534 GTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACGGGTACTTCG 161593
|||||| ||||||||||| ||||| || || || ||||| ||||| || || || || |
Sbjct 88525 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTG 88584
Query 161594 GTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCTTG 161653
|||| | || |||||||| ||| ||||| || || || || | ||||||||| | |
Sbjct 88585 GTCGATTAATCTTCCAATATGCTAGTTTCAATAATTCTCGTTCTTTACACTTCTTCTTAG 88644
Query 161654 CTGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCA 161713
|||||||||| || || || || ||||| ||||| | || | ||||| ||||| ||||
Sbjct 88645 CTGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCGTTCA 88704
Query 161714 ACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACA 161773
|| | ||||||||||| |||||||| ||| | ||||||||||| ||| || || || |
Sbjct 88705 ACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATA 88764
Query 161774 CCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATG 161833
| ||||| || | | ||||||||| ||||| |||||||| ||||| || || ||||
Sbjct 88765 CTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 88824
Query 161834 CTCACAACTTCCCTCTTGACCTTGCTGCTGCTGA 161867
|||| ||||||||||| ||| | ||||||| |||
Sbjct 88825 CTCATAACTTCCCTCTAGACTTAGCTGCTGTTGA 88858
Score = 524 bits (580), Expect = 8e-144
Identities = 730/1017 (72%), Gaps = 6/1017 (1%)
Strand=Plus/Minus
Query 162116 GTTTGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGG 162175
||||||| | | || |||||| | |||||||||||||||||||| || ||||||||
Sbjct 58152 GTTTGATATTATGGATGACTGGTTACGTAGAGACCGTTTCGTTTTTGTAGGTTGGTCTGG 58093
Query 162176 ACTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTT 162235
|| | || ||||| ||||||| | ||| | ||||||||| |||| || || || ||
Sbjct 58092 TCTATTGCTCTTTCCTTGTGCTTATTTCGCTGTAGGGGGTTGGTTTACGGGTACGACGTT 58033
Query 162236 CGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGG-TGCAAACTTTC 162294
|| ||| |||||||| || || | || ||||||||| | || || ||||| ||||
Sbjct 58032 TGTAACGTCATGGTATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGCAA--TTTC 57975
Query 162295 TTA-CTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGG 162353
||| | || || ||||||||||| || | | | | || ||| | || | || |||
Sbjct 57974 TTAACCGCAGCCGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTGCTGTGG 57915
Query 162354 GGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTT 162413
|||||||| | ||||| || || | || ||||| ||| | || || || |||||||||
Sbjct 57914 GGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTT 57855
Query 162414 GTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCA 162473
|| || || || || || || | ||| |||||||| ||| | ||||| || ||||| ||
Sbjct 57854 GTTGCTCTTCATGGCGCTTTCGGACTAATAGGTTTTATGTTACGCCAATTCGAACTTGCT 57795
Query 162474 CGA-CTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGCTGTATT 162532
||| || || | | || ||||| ||||| || || ||||| || || |||||||| ||
Sbjct 57794 CGATCTGTTCAAT-TGCGCCCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTT 57736
Query 162533 CGTTAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTT 162592
||| ||| || || || ||||| | || || || |||||||| || || ||
Sbjct 57735 TGTTTCTGTATTCCTAATTTATCCACTAGGCCAGTCTGGTTGGTTCTTTGCGCCTAGTTT 57676
Query 162593 CGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCT 162652
|| || ||||| || ||||||||| | ||||| | |||||||| ||||| ||||||||
Sbjct 57675 TGGTGTAGCAGCCATATTCCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGCT 57616
Query 162653 AAATCCTTTTCACATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTCTGCTAT 162712
|| |||||||| |||||||| || || ||| | | || | || |||| | ||||||
Sbjct 57615 GAACCCTTTTCATATGATGGGGGTTGCTGGTGTATTGGGCGCCGCTCTGCTATGTGCTAT 57556
Query 162713 TCATGGAGTGACAGTTGAAAATACACTGTACGAAGATGGCGAACAAGCAAACACTTTTAA 162772
|||||| | || || |||||||| | | |||||||| || ||||| || ||
Sbjct 57555 TCATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGGGCAAATACATTCCG 57496
Query 162773 AGCATTTGACTCCACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCTTCTG 162832
|| ||| || | || || | || ||||| ||||| ||||| || || ||||| || ||
Sbjct 57495 GGCTTTTAACCCAACCCAAGCTGAGGAAACTTATTCAATGGTCACCGCTAACCGTTTTTG 57436
Query 162833 GTCACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTTATGCTCTT 162892
||| || || || || |||||||| || || |||||||| |||||||||||| | ||
Sbjct 57435 GTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATT 57376
Query 162893 TGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTCAATCT 162952
||| || || | ||| | |||| ||| || | || | | || || || | || ||
Sbjct 57375 TGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACCT 57316
Query 162953 TCGTGCTTACGACTTTGTATCTCAAGAAGTTCGTGCGGCAGAAGACCCTGAGTTTGAGAC 163012
||||| || ||||| || || || ||| | ||||| || ||||| ||||| ||||||||
Sbjct 57315 ACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCCGAAGATCCTGAATTTGAGAC 57256
Query 163013 GTTCTATACAAAGAACATTCTTCTGAATGAAGGACTTCGAGCATGGTTAGCACCAGTGGA 163072
||||| || || || ||||| | || ||||| |||| || ||| | || | ||
Sbjct 57255 TTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGA 57196
Query 163073 CCAACCTCATGAGAACTTTGTGTTCCCTGAAGAGGTCTTGCCAAGAGGCAACGCTCT 163129
|| |||||||| ||| || | |||||||| ||||| | || | || ||||||||
Sbjct 57195 TCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 57139
>seq9259
Length=9423
Score = 98.7 bits (108), Expect = 1e-15
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 158332 GACGACCAGTACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGC 158391
|| ||| |||| | |||||| |||||||| | ||| | || || ||||||||
Sbjct 3859 GATGACGTGTACGTGCTTGACCAGGCTGAGGAGGAGGGAATTGACCTACCATACTCGTGT 3918
Query 158392 CGTGCAGGCGCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGC 158451
|| || || | || || |||||||| || || | || | || | ||| |||||
Sbjct 3919 CGGGCGGGGTCATGCTCTTCGTGTGCTGGTAAGGTGGTTGCCGGTAGCGTTGACCAGTCA 3978
Query 158452 GACCAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCT 158511
|||||| ||||| || |||||||| || || |||||| |||||||||||| ||
Sbjct 3979 GACCAGAGTTTCCTTGATGATGACCAGATTGAAGCTGGTTGGGTTCTGACTTGTGCCGCT 4038
Query 158512 TATCCTACAAGTGATTGTGTGATTGAGACTGACAAGGAAGAGGAACT 158558
|| || | |||| | ||||||||| ||||||| ||||||||
Sbjct 4039 TACCCGTCTGCTGATGTTACCATTGAGACTCACAAGGAGGAGGAACT 4085
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 545640290395200
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