Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq1 527 2e-145 >seq1 Length=146306 Score = 527 bits (584), Expect = 2e-145 Identities = 712/988 (72%), Gaps = 8/988 (1%) Strand=Plus/Minus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 |||||| ||||| |||||||||||||||||||| || ||||||||||| | |||||||| Sbjct 88850 AGCTAAGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 88791 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | ||| | | |||||||| ||| | || | ||| | | | ||||| Sbjct 88790 AGCACGGTTAATGATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTACA-- 88733 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||||||||| ||||| ||||| | || || ||||||||| || || | || || Sbjct 88732 -GATTGGTTGAAATTGAAACCATTTAAGTTGAACGCCATAGTGCTAATACCTAAAGCAGT 88674 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 || ||| || | || ||||||||||| |||||||| |||| | | ||| || Sbjct 88673 AAACCAAATACCTACTACCGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAATTATT 88614 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 || |||||||| |||||||| | || ||||| || |||||||| || || |||||||| Sbjct 88613 GAAACTAGCATATTGGAAGATTAATCGACCAAAATAACCATGAGCAGCTACGATATTATA 88554 Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190 || ||||| ||||| || ||| | || || | || ||| ||| || || ||||| Sbjct 88553 AGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 88494 Query 18191 TCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAA 18250 || || | ||||| || | || ||||||||| |||| | || ||||| Sbjct 88493 CCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAA 88434 Query 18251 TACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAA 18310 ||| || || ||||| | ||| || || || ||||||||||| ||||| || || ||||| Sbjct 88433 TACACCAGCTACACCCAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAA 88374 Query 18311 TACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCC 18370 ||| | |||||| ||||||||||| ||| || ||||||||||||||||| ||||| || Sbjct 88373 TACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCC 88314 Query 18371 TTGTCCAAAAGGATA-AACGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAATAAG 18429 ||| || | || || | | ||||| | || | || || || || || || ||||| | Sbjct 88313 TTGACCGATTGGGTAGATCAAGAAAACCGCAGTA-GCCGCCGCAACCGGAGCTGAATATG 88255 Query 18430 CAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGT 18489 ||||| |||||| || |||||||| || | ||||||||||||| | || ||||| | Sbjct 88254 CAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATAT 88195 Query 18490 AAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATA 18549 || || | || | | ||||| | ||||| || | ||| || || || || |||| Sbjct 88194 AACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATA 88135 Query 18550 ACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAG 18609 ||||||| || | | ||| |||||||| ||||| || ||||| | || || || || Sbjct 88134 ACCACTCATCAACAGATGCTGCTTCCCATATTGGATAAAAGTGCAACCCTATAGCTGCAG 88075 Query 18610 ATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAG 18669 | | || | || || || || || || |||||||| || |||| | ||| || |||| Sbjct 88074 AAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAG 88015 Query 18670 GCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTG 18729 | |||||||||||||| || || || ||||||||||||| || || || | |||| | | Sbjct 88014 GTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCTATAATAAATACAG 87955 Query 18730 TAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGT 18789 || ||| || || | || ||||||||| | || ||||||||||| | ||| ||||||| Sbjct 87954 AAGTTGCAGTCAATAATGTAGGGATCATCAAAACACCAAACCACCCGATGTAAAGGCGGT 87895 Query 18790 TGTTTGTACTCGTAACCCAGTCACATAA 18817 | | || || || | ||||| ||| || Sbjct 87894 TTTCGGTGCTGGTTATCCAGTTACAGAA 87867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150765456085680