Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq1 565 3e-156 >seq1 Length=146306 Score = 565 bits (626), Expect = 3e-156 Identities = 736/1015 (73%), Gaps = 2/1015 (0%) Strand=Plus/Plus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | || | ||||| ||||| |||| || ||||||||| || ||||| Sbjct 57139 AGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 57198 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | |||| ||| ||||| | |||||| || || || || || || |||||||| ||| Sbjct 57199 TGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAGAGAATATTTTTGGTGTAGAAAGTC 57258 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 || || || |||||||| ||||| | ||| || ||||| || |||||||| ||||| ||| Sbjct 57259 TCAAATTCAGGATCTTCGGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACGTAGG 57318 Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949 || | || ||||| | | || | | ||| |||| | ||| | || || ||||| Sbjct 57319 TTCAAGGCCAGACCGACTACCCCAAGAGCACTCATCCATAAACCGGTTACTGGTACAAAT 57378 Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009 | |||||||||||| ||||| | ||||| ||| |||| ||||||||||| ||||| Sbjct 57379 AACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGGACCAA 57438 Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTG 102069 |||||||| || || |||||||||||||| || || |||| || | | || || | Sbjct 57439 AAACGGTTAGCGGTGACCATTGAATAAGTTTCCTCAGCTTGGGTTGGGTTAAAAGCCCGG 57498 Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129 || || ||||| ||||||||||||| | | ||| || || || || |||| || || Sbjct 57499 AATGTATTTGCCCCATCACCATCTTCAAATAAAGTATTTTCTACGGTAGCACCATGAATA 57558 Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189 || | ||||| || | |||| | ||| ||||| ||||||||||| || ||||| ||| Sbjct 57559 GCACATAGCAGAGCGGCGCCCAATACACCAGCAACCCCCATCATATGAAAAGGGTTCAGC 57618 Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249 ||||| ||||| || || || | ||||| | ||||| ||||| ||||| |||||||| Sbjct 57619 GTCCAATTATGAAACCCTTGAAAAAAGAGGATGAATCGGAATATGGCTGCTACACCAAAA 57678 Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAA 102309 |||||||||||||||| ||||| || || ||||| || || || ||| |||||| Sbjct 57679 CTAGGCGCAAAGAACCAACCAGACTGGCCTAGTGGATAAATTAGGAATACAGAAACAAAA 57738 Query 102310 ACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCC 102369 ||||| || || |||||||| || || ||||| || || || | | || | | ||| Sbjct 57739 ACAGCAATTGGGCCAGAGAATGCGATTGCATTATAAGGGCGCAATTGAACAGATCGAGCA 57798 Query 102370 AACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAA 102429 | |||||||| || | ||| ||||| || || | || || || || ||||| |||||| Sbjct 57799 AGTTCGAATTGGCGTAACATAAAACCTATTAGTCCGAAAGCGCCATGAAGAGCAACAAAA 57858 Query 102430 GCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCAA 102489 | ||| || || || | ||| ||| | ||||||||||| |||||||||||||| Sbjct 57859 GTCCACAGGCCGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGACCCCAC 57918 Query 102490 AGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAAA 102549 || | | | ||| || | | | | |||||| || || || || || || | |||| Sbjct 57919 AGCAACAACAAAGAGTGTGCTAAACTATTAGCAGGAGTAGAAACGGCTGCGGTTAAGAAA 57978 Query 102550 TTAGCA-CCTTCAAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAAACGT 102608 || ||| ||||| | || | || | ||| ||||||||||| || || ||||||| Sbjct 57979 TT-GCAGCCTTCCAAATAGGAACTGGCCAACCCATGGGTATACCATGACGTTACAAACGT 58037 Query 102609 CGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAGTCCAGA 102668 ||| || |||| ||| ||||| | |||| ||||||| ||||| || | ||| ||||| Sbjct 58038 CGTACCCGTAAACCAACCCCCTACAGCGAAATAAGCACAAGGAAAGAGCAATAGACCAGA 58097 Query 102669 CCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTCAAAC 102723 |||||| ||||| || || || |||| | ||||||||||| || |||||| Sbjct 58098 CCAACCTACAAAAACGAAACGGTCTCTACGTAACCAGTCATCCATAATATCAAAC 58152 Score = 538 bits (596), Expect = 4e-148 Identities = 697/965 (72%), Gaps = 8/965 (1%) Strand=Plus/Minus Query 103170 CAGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCA 103229 ||||||| | ||| || |||||||| ||||| ||||| || ||||| ||||||||||| | Sbjct 88854 CAGCAGCTAAGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAA 88795 Query 103230 GACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGA 103289 | ||| ||||| | | || ||||| || || | |||||||| |||| ||||| | Sbjct 88794 GGTTAGCACGGTTAATGATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTA 88735 Query 103290 TGGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGG 103349 || |||||||| ||||| || || | |||||||||||| ||||||| ||| | || | Sbjct 88734 CAGATTGGTTGAAATTGAAACCATTTAAGTTGAACGCCATAGTGCTAATACCTAAAGCAG 88675 Query 103350 TGAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGT 103409 | ||||| ||||| ||||| || | || || | Sbjct 88674 TAAACCAAATACCTACTACCGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAATTAT 88615 Query 103410 TGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGT 103469 |||| || ||||||||||| || ||||| || ||||||||||| |||||||| || | Sbjct 88614 TGAAACTAGCATATTGGAAGATTAATCGACCAAAATAACCATGAGCAGCTACGATATTAT 88555 Query 103470 ATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCT 103529 | || ||||||||||| ||||| ||||||| | || ||||||| |||| || || | Sbjct 88554 AAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTT 88495 Query 103530 CAC-GAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCG 103588 | | || | | | || | || |||| ||||| ||||||||||| || || || || ||| Sbjct 88494 CCCTGATCAAACTAGAAGTTACCAAG-GAACCATGCATAGCACTAAATAGGGAGCCGCCG 88436 Query 103589 AAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGG 103648 || || ||||| || |||| |||||| || |||||||| || ||||| || || || ||| Sbjct 88435 AATACACCAGCTACACCCAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGG 88376 Query 103649 AAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAA 103708 || || | |||| ||||||| || || ||||| || | ||||||| |||| || || Sbjct 88375 AATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTT 88316 Query 103709 CCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTAT 103768 |||||||| | ||||||| |||||| || || | || |||||||| ||||| || ||| Sbjct 88315 CCTTGACCGATTGGGTAGATCAAGAAAACCGCAGTAGCCGCCGCAACCGGAGCTGAATAT 88256 Query 103769 GCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATA 103828 || ||| ||||| || ||||| ||||||||| | | |||||||||||| |||||| Sbjct 88255 GCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATA 88196 Query 103829 TATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATAC 103888 || | | |||| | |||||| | || | || | |||||||||| || || Sbjct 88195 TAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTAT 88136 Query 103889 AGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTG 103948 | ||||||||||| ||||||||||||||| || ||||| ||||| | || || || || Sbjct 88135 AACCACTCATCAACAGATGCTGCTTCCCATATTGGATAAAAGTGCAACCCTATAGC--TG 88078 Query 103949 GAGGAG--GGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGA 104006 || || |||| || |||||||| || || ||||| ||||| | || || |||| | Sbjct 88077 CAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAAA 88018 Query 104007 CGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA-G 104065 | ||||||||||| || || ||||| || ||||| || || | ||| || | || || Sbjct 88017 CAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCTATAATAAATA 87958 Query 104066 CAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGA 104125 |||| ||||| | ||| | || |||||||||| ||||| ||||| || | || || Sbjct 87957 CAGA-AGTTGCAGTCAATAATGTAGGGATCATCAAAACACCAAACCACCCGATGTAAAGG 87899 Query 104126 CGGTT 104130 ||||| Sbjct 87898 CGGTT 87894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631076789937600