Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq1 477 3e-130 >seq1 Length=146306 Score = 477 bits (528), Expect = 3e-130 Identities = 680/954 (71%), Gaps = 6/954 (1%) Strand=Plus/Minus Query 21476 GTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCACG 21535 ||| || |||||||| || || || || |||||||| || || | |||||||| ||||| Sbjct 88844 GTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACG 88785 Query 21536 GTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGGTT 21595 ||||| || |||||||| || || || || | || | | | | | | ||||||||| Sbjct 88784 GTTAATGATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTACAGATTGGTT 88725 Query 21596 AAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAAT 21655 || ||||||||||| |||||||| ||||| || | || | |||| ||||||||| Sbjct 88724 GAAATTGAAACCATTTAAGTTGAACGCCATAGTGCTAATACCTAAAGCAGTAAACCAAAT 88665 Query 21656 ACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGC 21715 |||||| || ||||| ||||| | ||||| || | | ||| |||||||| || ||||| Sbjct 88664 ACCTACTACCGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAATTATTGAAACTAGC 88605 Query 21716 ATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTC 21775 |||||||||||| | ||||||||||| || |||||||| || ||||| ||||| ||||| Sbjct 88604 ATATTGGAAGATTAATCGACCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTC 88545 Query 21776 CTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAG 21835 ||||||||| || ||||||| | || || | | ||| || || || | || | Sbjct 88544 CTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAA 88485 Query 21836 TGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGC 21895 || || |||| | ||| ||||||||| || | || || ||||| || || Sbjct 88484 ACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGC 88425 Query 21896 CACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCAT 21955 ||||||| ||||||||| || |||||||| || ||||||||||||||||| || | ||| Sbjct 88424 TACACCCAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCAT 88365 Query 21956 GTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAA 22015 | ||||||| || || || || || | |||||| ||||||||||| || || || | Sbjct 88364 GAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGAT 88305 Query 22016 CGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGAT 22075 || || | | ||| || ||||| || || || || ||||| || || |||||| || Sbjct 88304 TGGGTAGATCAAGAAAACCGCAGTAGCCGCCGCAACCGGAGCTGAATATGCAACAGCAAT 88245 Query 22076 CCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGAC 22135 ||| || | ||| || || || | |||||||||||||| || ||||| ||| | || Sbjct 88244 CCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTAC 88185 Query 22136 GCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATC 22195 |||| | |||||| | || | || | | ||||| || ||||| | ||| ||||| Sbjct 88184 ACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCACTCATC 88125 Query 22196 AAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAAC 22255 || | || |||||||| ||||| || ||||| | || || || | | |||| Sbjct 88124 AACAGATGCTGCTTCCCATATTGGATAAAAGTGCAACCCTATAGCTGCAGAAGTAGGAAT 88065 Query 22256 GACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGAT 22315 | ||| || || || || ||||| || || | || || |||| || ||||| || || Sbjct 88064 AATGGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGTTCACGAAT 88005 Query 22316 TCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAA---ACAAGTTGTAGC 22372 ||||| || || || || || || ||| ||||| |||||||| | |||||| | Sbjct 88004 ACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCTATAATAAATACAGAAGTTGCA-- 87947 Query 22373 GGCAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTT 22426 | ||| | | | || ||||| | || || ||||| || | ||||| ||||| Sbjct 87946 GTCAATAATGTA-GGGATCATCAAAACACCAAACCACCCGATGTAAAGGCGGTT 87894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145673730381600