Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq1 493 1e-134 seq480 111 2e-19 >seq1 Length=146306 Score = 493 bits (546), Expect = 1e-134 Identities = 709/994 (71%), Gaps = 4/994 (0%) Strand=Plus/Minus Query 124040 TCAGCAGATGCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATA 124099 ||| ||| |||| |||||| |||||||| || ||||| | ||||||||||||||||||| Sbjct 88858 TCAACAGCAGCTAAGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 88799 Query 124100 CCCAAGTTTGCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCATCA 124159 || | ||| || | ||| | | |||| |||| || | | || | | |||| Sbjct 88798 CCAAGGTTAGCACGGTTAATGATATCAGCCCAAGTATTAATTACACGACCTTGACTATCA 88739 Query 124160 ACAACTGATTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATA 124219 || || |||||||| || ||||||||||| |||||||| ||||| |||| ||||| | | Sbjct 88738 ACTACAGATTGGTTGAAATTGAAACCATTTAAGTTGAACGCCATAGTGCTAATACCTAAA 88679 Query 124220 GAGGTTAACCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAG 124279 | || ||||| | || ||| || || || | |||| ||||||||| | | | || Sbjct 88678 GCAGTAAACCAAATACCTACTACCGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAA 88619 Query 124280 TTGTTGAATGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATG 124339 || ||||| |||||| |||||||| | |||||||| ||||| || || ||||| || Sbjct 88618 TTATTGAAACTAGCATATTGGAAGATTAATCGACCAAAATAACCATGAGCAGCTACGATA 88559 Query 124340 TTGTATGTTTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTT 124399 || || |||||||| ||||| ||||| | ||||| | || || || | ||||| Sbjct 88558 TTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 88499 Query 124400 GTTTCTCTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCT 124459 ||||| ||||| | | ||| || || | ||||||||||| || |||| || || Sbjct 88498 GTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCG 88439 Query 124460 CCGAACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCT 124519 ||||| | || ||||| || |||||| || || ||||| || ||||| ||||| || Sbjct 88438 CCGAATACACCAGCTACACCCAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCC 88379 Query 124520 TGGAAAACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAAT 124579 ||||| || | ||| |||||||||||||| || || || || |||||||||||||| || Sbjct 88378 TGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAA 88319 Query 124580 GAACCCTGACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAA 124639 || ||||| | |||||| | ||||| || || || || | || || |||||| Sbjct 88318 CTTCCTTGACCGATTGGGTAGATCAAGAAAACCGCAGTAGCCGCCGCAACCGGAGCTGAA 88259 Query 124640 TAAGCAACACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCC 124699 || |||||| |||||||||||||| || | | | | |||||||||| | ||| Sbjct 88258 TATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCC 88199 Query 124700 ATGTATGCTGAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTA 124759 || || | | ||||| | |||||| | || | | || ||||||||||||||| Sbjct 88198 ATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTG 88139 Query 124760 TACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCG 124819 || ||||| |||||||||| |||||||||||| ||||| || ||||| | || ||||| Sbjct 88138 TATAACCACTCATCAACAGATGCTGCTTCCCATATTGGATAAAAGTGCAACCCTATAGCT 88079 Query 124820 TTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACCCGCT 124879 || | |||| || |||||||| || || ||||| || || | | ||| || | Sbjct 88078 GCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAA 88019 Query 124880 ACTGGTTCTCTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAA- 124938 || ||||| | || || || ||||| || ||||| || ||||| || || | || || Sbjct 88018 ACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCTATAATAAAT 87959 Query 124939 ACATGCTGCTGCTGTGAGTAAGCATGGAATCATTAGAACACCAAACCAACCAACATAAAT 124998 ||| | | ||| || | ||| || ||||| | |||||||||||| || | |||| Sbjct 87958 ACA-GAAGTTGCAGTCAATAATGTAGGGATCATCAAAACACCAAACCACCCGATGTAAAG 87900 Query 124999 TCTGTTGTTTGTTGAT-GTTACCCACTCACAGAA 125031 | ||| || | || | |||| ||| | |||||| Sbjct 87899 GCGGTT-TTCGGTGCTGGTTATCCAGTTACAGAA 87867 Score = 327 bits (362), Expect = 1e-84 Identities = 701/1048 (67%), Gaps = 21/1048 (2%) Strand=Plus/Plus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | |||| || || || ||||||| || || ||||| || || Sbjct 57135 TTAAAGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTG 57194 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || | |||||| || | || ||||| || | ||||| || || || ||||| Sbjct 57195 ATCTTGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAGAGAATATTTTTGGTGTAGAA 57254 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 |||||| || || || ||||| ||||| | || || || || || ||||| || || | Sbjct 57255 AGTCTCAAATTCAGGATCTTCGGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACG 57314 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 ||||| | || ||||| || | || | || |||| | ||| | || || || Sbjct 57315 TAGGTTCAAGGCCAGACCGACTACCCCAAGAGCACTCATCCATAAACCGGTTACTGGTAC 57374 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 || ||||||| ||| ||||| | | ||| || ||||| || | ||||| || || || Sbjct 57375 AAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGGA 57434 Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225 ||| || | ||| || || | ||| ||||||||| || | || || || | || || Sbjct 57435 CCAAAAACGGTTAGCGGTGACCATTGAATAAGTTTCCTCAGCTTGGGTTGGGTTAAAAGC 57494 Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285 | ||| |||| ||| || ||| || ||||| | || || Sbjct 57495 CCGGAA---TGTAT-TTGCC-----CCATCACCAT------------CTTCAAATAAAGT 57533 Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345 || | || || ||||||||||| |||||||| | || | || | || || ||||| Sbjct 57534 ATTTTCTACGGTAGCACCATGAATAGCACATAGCAGAGCGGCGCCCAATACACCAGCAAC 57593 Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405 |||||||| ||||| || |||| || || || || ||||| | || | ||| | Sbjct 57594 CCCCATCATATGAAAAGGGTTCAGCGTCCAATTATGAAACCCTTGAAAAAAGAGGATGAA 57653 Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465 || || || ||||| ||||| || || || |||||||||| ||| |||||||| Sbjct 57654 TCGGAATATGGCTGCTACACCAAAACTAGGCGCAAAGAACCAACCAGACTGGCCTAGTGG 57713 Query 123466 ATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTA 123525 ||| || || || | | || || || || |||||||||||| ||| || || Sbjct 57714 ATAAATTAGGAATACAGAAACAAAAACAGCAATTGGGCCAGAGAATGCGATTGCATTATA 57773 Query 123526 AGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTCC 123585 ||| | | ||| || || | || ||||| | | ||| |||||||| ||||| Sbjct 57774 AGGGCGCAATTGAACAGATCGAGCAAGTTCGAATTGGCGTAACATAAAACCTATTAGTCC 57833 Query 123586 AAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGAA 123645 || | ||||| | || ||||| |||| || || || | ||| |||||||| || Sbjct 57834 GAAAGCGCCATGAAGAGCAACAAAAGTCCACAGGCCGCCTAATTGACACCAACGAGTAAA 57893 Query 123646 TGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCACCAGG 123705 ||||||||||||||| ||||| || |||| | | || | | | | |||| Sbjct 57894 ATCTCCTTGTGCTTCAGGACCCCACAGCAACAACAAAGAGTGTGCTAAACTATTAGCAGG 57953 Query 123706 TGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACCATG 123765 || || || ||||| |||||||| || || || | ||| ||| || | ||||| Sbjct 57954 AGTAGAAACGGCTGCGGTTAAGAAATTGCAGCCTTCCAAATAGGAACTGGCCAACCCATG 58013 Query 123766 TGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATACGC 123825 ||||||||||| || || || || || || |||||||| || | | | ||| || Sbjct 58014 GGTATACCATGACGTTACAAACGTCGTACCCGTAAACCAACCCCCTACAGCGAAATAAGC 58073 Query 123826 ACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAACCA 123885 |||||| | || || ||||||||||| |||| || || ||||| ||||| |||||| Sbjct 58074 ACAAGGAAAGAGCAATAGACCAGACCAACCTACAAAAACGAAACGGTCTCTACGTAACCA 58133 Query 123886 GTCGTCAAGAACATCAAACCAACCTCTT 123913 ||| || | || ||||||| || || || Sbjct 58134 GTCATCCATAATATCAAACAAATCTTTT 58161 >seq480 Length=60730 Score = 111 bits (122), Expect = 2e-19 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||| ||||| || || || ||| | ||||| | || || || || | || ||||| || Sbjct 35922 CATCGCCTCAGCGGCCGCGGTTCCCTCATCAAGTAATGAGGCATTAGACATAGGTAAACC 35863 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 ||||| || || || | |||||| |||| || |||| |||||| | |||||||| || Sbjct 35862 AGTAAGATCAGTAATCATAGTTTGGAAATTCAACAAAGATTCCAAACGACCCTGAGAAAT 35803 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTC 140034 ||||||||| || || ||||| || ||||||| ||||||||| | || |||| Sbjct 35802 CTCAGCTTGGTAAGGTGTGTATTGAGTATACCAACCAGGATTCTCCATAATATTTC 35747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576771282654400