Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq1 565 3e-156 seq24472 95.1 2e-14 >seq1 Length=146306 Score = 565 bits (626), Expect = 3e-156 Identities = 725/994 (73%), Gaps = 4/994 (0%) Strand=Plus/Minus Query 26725 TCAGCAGCAGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAAT 26784 ||| ||||||| | || | || || ||||| || || | ||| || || || || | Sbjct 88858 TCAACAGCAGCTAAGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 88799 Query 26785 CCAAGACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCA 26844 ||||| ||||||||| | | || |||||||| || | |||||||| || |||| Sbjct 88798 CCAAGGTTAGCACGGTTAATGATATCAGCCCAAGTATTAATTACACGACCTTGACTATCA 88739 Query 26845 ATCACAGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGT 26904 | ||||| || ||||| |||||||| || | ||||| ||||| ||| | ||| | Sbjct 88738 ACTACAGATTGGTTGAAATTGAAACCATTTAAGTTGAACGCCATAGTGCTAATACCTAAA 88679 Query 26905 GCGGTGAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAG 26964 || || ||||| || || || || ||||| ||||| | ||||||||| || ||||| || Sbjct 88678 GCAGTAAACCAAATACCTACTACCGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAA 88619 Query 26965 TTGTTGAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATG 27024 || ||||| ||||||||||||||| || ||||| || || ||||| || || ||||| Sbjct 88618 TTATTGAAACTAGCATATTGGAAGATTAATCGACCAAAATAACCATGAGCAGCTACGATA 88559 Query 27025 TTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTC 27084 || || || ||||| ||||||||||| | ||||| | || || ||| |||| || Sbjct 88558 TTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 88499 Query 27085 GTCTCACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCA 27144 || || | || | ||| || |||| || ||||||||| || || || || Sbjct 88498 GTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCG 88439 Query 27145 CCGAATACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCC 27204 |||||||| ||||| ||||| | |||||| || |||||||||||||| ||||| || ||| Sbjct 88438 CCGAATACACCAGCTACACCCAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCC 88379 Query 27205 TGGAATACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAA 27264 |||||||||| |||| |||| ||||||||||| || || ||||||||| |||| || ||| Sbjct 88378 TGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAA 88319 Query 27265 GAACCTTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAA 27324 |||||||||| || |||| | ||| || ||| | || || || || ||||| ||| Sbjct 88318 CTTCCTTGACCGATTGGGTAGATCAAGAAAACCGCAGTAGCCGCCGCAACCGGAGCTGAA 88259 Query 27325 TATGCTACACAGATCCATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCC 27384 ||||| ||| ||||| ||||||||||| | ||| | |||||||||||||| ||| Sbjct 88258 TATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCC 88199 Query 27385 ATATAAGCATAGATGCCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTA 27444 |||||| | | || | | |||||| | || | || | |||||||||| || Sbjct 88198 ATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTG 88139 Query 27445 TACAACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCA 27504 || ||||||||||| | |||||||||||||| ||||| || ||||| | || || || Sbjct 88138 TATAACCACTCATCAACAGATGCTGCTTCCCATATTGGATAAAAGTGCAACCCTATAGCT 88079 Query 27505 TTTGAACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCA 27564 ||| | || | || ||||||||||| || ||||| || || | || || |||| | Sbjct 88078 GCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAA 88019 Query 27565 ACGGGTTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAA- 27623 || |||||||||||||| |||||||| || || || || || ||||| || | ||| || Sbjct 88018 ACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCTATAATAAAT 87959 Query 27624 GCAGACAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACCAACCAACATACAA 27683 |||| |||||| | || | ||| |||||||||| ||||| ||||| || | || | Sbjct 87958 ACAGA-AGTTGCAGTCAATAATGTAGGGATCATCAAAACACCAAACCACCCGATGTAAAG 87900 Query 27684 ACGGTTGTTAGTTGAT-GTCACCCACTCACAGAA 27716 ||||| || | || | || | ||| | |||||| Sbjct 87899 GCGGTT-TTCGGTGCTGGTTATCCAGTTACAGAA 87867 Score = 515 bits (570), Expect = 5e-141 Identities = 731/1022 (72%), Gaps = 6/1022 (1%) Strand=Plus/Plus Query 23386 ATCAAAGAGCATTACCTCTTGGAAGGATTTCCTCAATTACAGGAAAGTTTTCGTGTGGTT 23445 || ||||||| || || | || || | |||||| | || |||||| || || | Sbjct 57134 ATTAAAGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCT 57193 Query 23446 GGTCAATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAAAATATTTTTCGTGTAGA 23505 | || || | |||||| |||| | || | ||| || | ||||||||| ||||||| Sbjct 57194 GATCTTGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAGAGAATATTTTTGGTGTAGA 57253 Query 23506 AGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACTCACAAAATCATAAGCAC 23565 | |||||| | | |||||| || ||||| || || || || || ||||| |||| Sbjct 57254 AAGTCTCAAATTCAGGATCTTCGGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCAC 57313 Query 23566 GAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCAAAGACCCATGACAGGAA 23625 | || || | || || || | | |||| || | | ||| | ||| | || || | Sbjct 57314 GTAGGTTCAAGGCCAGACCGACTACCCCAAGAGCACTCATCCATAAACCGGTTACTGGTA 57373 Query 23626 CAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATTTGTG 23685 |||| ||||||||||| || |||||||| |||||| ||| |||||||| |||||||| | Sbjct 57374 CAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGG 57433 Query 23686 ACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCGAACG 23745 |||||||||| || || || ||||| ||||| || ||||| | || || | | || | Sbjct 57434 ACCAAAAACGGTTAGCGGTGACCATTGAATAAGTTTCCTCAGCTTGGGTTGGGTTAAAAG 57493 Query 23746 CTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCAT 23805 | || || |||||| || ||||||||| | | ||||| || || ||| | |||| Sbjct 57494 CCCGGAATGTATTTGCCCCATCACCATCTTCAAATAAAGTATTTTCTACGGTAGCACCAT 57553 Query 23806 GAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGGT 23865 |||||||| | || || || | |||| || ||||||||| ||||||||||| || |||| Sbjct 57554 GAATAGCACATAGCAGAGCGGCGCCCAATACACCAGCAACCCCCATCATATGAAAAGGGT 57613 Query 23866 TGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACAC 23925 | |||||||| |||||||| || || | ||||| | ||| | ||| || || || |||| Sbjct 57614 TCAGCGTCCAATTATGAAACCCTTGAAAAAAGAGGATGAATCGGAATATGGCTGCTACAC 57673 Query 23926 CGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACAGACA 23985 | ||||| ||||||||||||||| ||||| || | ||||| || ||||||||||| | Sbjct 57674 CAAAACTAGGCGCAAAGAACCAACCAGACTGGCCTAGTGGATAAATTAGGAATACAGAAA 57733 Query 23986 CGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAATTAGA- 24044 | || |||||||| || ||||| || || || ||||| || || || | | || ||| Sbjct 57734 CAAAAACAGCAATTGGGCCAGAGAATGCGATTGCATTATAAGGGCGCAATTGAA-CAGAT 57792 Query 24045 CGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGAGCA 24104 || || ||||| || || ||||||||||||||||| ||| | || || || || |||||| Sbjct 57793 CGAGCAAGTTCGAATTGGCGTAACATAAAACCTATTAGTCCGAAAGCGCCATGAAGAGCA 57852 Query 24105 ACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTGAGACTCAGGA 24164 ||||| | ||| || || || | ||| ||| || ||| || ||||| | |||||| Sbjct 57853 ACAAAAGTCCACAGGCCGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGA 57912 Query 24165 CCCCAAAGTAGAAGAAGAGAATGACCCATAGCGTCAGCAGGCGTCGAGACAGCTGCCG-T 24223 ||||| || | | | ||| || | | | | |||||| || || || ||||| | | Sbjct 57913 CCCCACAGCAACAACAAAGAGTGTGCTAAACTATTAGCAGGAGTAGAAACGGCTGCGGTT 57972 Query 24224 AAGAAAGTTAGCA-CCCTCAAGATAGGAACTAGCAAGTCCATGGGTGTACCAACTCGTAA 24282 |||||| | ||| || || | ||||||||| || | |||||||| ||||| ||| | Sbjct 57973 AAGAAA--TTGCAGCCTTCCAAATAGGAACTGGCCAACCCATGGGTATACCATGACGTTA 58030 Query 24283 CAAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAGCAGTGGGAAGAAGTAGGA 24342 |||| | || || |||| |||||| || | || | ||||||| |||| || | | Sbjct 58031 CAAACGTCGTACCCGTAAACCAACCCCCTACAGCGAAATAAGCACAAGGAAAGAGCAATA 58090 Query 24343 GTCCAGACCAACCCACAAAGACAAAGCGATCCCGTTTAACCCAGTCGTCCAAGATGTCAA 24402 | ||||||||||| ||||| || || || || | | |||||| |||| || |||| Sbjct 58091 GACCAGACCAACCTACAAAAACGAAACGGTCTCTACGTAACCAGTCATCCATAATATCAA 58150 Query 24403 AC 24404 || Sbjct 58151 AC 58152 >seq24472 Length=4609 Score = 95.1 bits (104), Expect = 2e-14 Identities = 183/268 (68%), Gaps = 8/268 (3%) Strand=Plus/Minus Query 46980 ATCATCGCGGGAAGAACATGCGAACTTTCTAGGTCAAAATTATCATTTGGACCATATAGG 47039 |||| || || | |||||| ||| | || | | |||||| ||||| ||||||||||| Sbjct 2458 ATCAATGCAGGCAAAACATGGGAATTCTCAGGATGAAAATTGTCATTAGGACCATATAGA 2399 Query 47040 TTTGTAGGCATCAAAGAGATAGCATTAAATCCA-TACTGCTG---ATGGTATGCCTGACA 47095 || ||||||||| ||| || |||| ||| | || || | |||| || || || Sbjct 2398 TTAGTAGGCATCCCAGAAATGGCAT----CCCAGTTGTGTTGAATACGGTAAGCTTGGCA 2343 Query 47096 CATCTTGATACCAGCAATCTTTGCAATAGCATAAGAATCATTACTAGGTTCAAGAGGACC 47155 ||| || || ||||| || || ||||| || || | ||||| | || || | ||| || Sbjct 2342 CATTTTAATGCCAGCGATTTTGGCAATGGCGTACCATTCATTGGTGGGCTCTAAAGGGCC 2283 Query 47156 ACTCATTAGATATTCTTCCCTAATAGGTTGTTCACATAATTTTGGATAAATGCAGGAAGA 47215 | ||| ||| | ||| |||||||| || || || ||||||||||| || Sbjct 2282 AGTCAAAAGAGCTGATTCGGGTATAGGTTGAGGGGCAAACTTAGGGTAAATGCAGGATGA 2223 Query 47216 ACCAAGAAATAAAAGTTTCTTAACACCA 47243 || || || | ||||| | |||||| Sbjct 2222 TCCCAGGAAGAGGAGTTTTTGGACACCA 2195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 662934575790400