Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq407 156 5e-33 seq5880 136 5e-27 seq37979 113 5e-20 seq6823 91.5 2e-13 seq2381 89.7 6e-13 seq108 87.8 2e-12 >seq407 Length=47313 Score = 156 bits (172), Expect = 5e-33 Identities = 256/367 (70%), Gaps = 4/367 (1%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 ||||| || ||||||||||| || || || || || || ||| || ||| ||||| Sbjct 36349 CCAGGGACAGGAAAGACCCTGCTGGCAAAGGCTATTGCAGGGGAAGCAGGTGTGCCATTT 36408 Query 175375 ATC--CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGG 175432 || || | || | || | || || |||||||||||||| |||||||| | | Sbjct 36409 TTCTCCATT--TCGGGTTCAGAATTCGTTGAGATGTTTGTTGGCGTGGGTGCTTCTCGAG 36466 Query 175433 TTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGA 175492 | || ||||||||| ||| || |||||| ||||| ||||| || ||||||| | Sbjct 36467 TGCGTGATCTCTTTAAAAAGGCGAAAGAAAATGCTCCATGCATTGTTTTTGTTGATGAAA 36526 Query 175493 TTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAAC 175552 ||||||| || || | ||| | | |||| | | || ||||| || || |||| Sbjct 36527 TTGATGCTGTTGGGAGACAAAGAGGTACTGGAATTGGGGGAGGGAATGATGAAAGGGAAC 36586 Query 175553 AAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGG 175612 ||||| ||||||| || ||||| ||||||||||||||||| | | |||||| | | | Sbjct 36587 AAACACTTAATCAGCTTCTCACTGAGATGGATGGCTTTGAGGGTAACACTGGCGTAATAG 36646 Query 175613 TTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTT 175672 | ||||| || ||||| | | || || |||||| || || || | || || |||| Sbjct 36647 TAATTGCTGCAACTAACAGAGCTGACATTCTTGATTCAGCTCTTCTGAGGCCAGGACGTT 36706 Query 175673 TTGATCG 175679 |||| || Sbjct 36707 TTGACCG 36713 >seq5880 Length=12336 Score = 136 bits (150), Expect = 5e-27 Identities = 263/385 (68%), Gaps = 10/385 (3%) Strand=Plus/Minus Query 175300 CTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAA 175359 ||||| | |||| |||||||| |||||||| | || || || || || || ||| Sbjct 8139 CTTCTTGTGGGTCCTCCAGGTACCGGAAAGACATTGCTTGCAAAGGCTATTGCTGGAGAA 8080 Query 175360 TCAAATGTCCCATTCATC--CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTG 175417 | ||| ||||| || || | |||| | | ||||| |||||||||||||||| Sbjct 8079 GCTGGTGTTCCATTTTTCTCCATT--TCTGGTTCCGAATTTGTAGAGATGTTTGTTGGTG 8022 Query 175418 TGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTG 175477 ||||||| | || || ||||| ||| ||| || |||||| |||||||||| Sbjct 8021 TGGGTGCATCTCGAGTGCGTGATCTATTTAAAAAGGCAAAAGAAAATGCTCCATGTATTG 7962 Query 175478 TCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCAG 175534 | || ||||||| || ||||| ||||| | ||| | | |||| |||| || Sbjct 7961 TTTTTGTTGATGAAATAGATGCAGTGGGGAGGCAGAGAGGTACTGGAATTGGT---GGAG 7905 Query 175535 CAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACA 175594 ||||| || || ||||| || | ||||| || ||||| ||||||||||| ||||| Sbjct 7904 GGAATGATGAAAGGGAACAGACGTTGAATCAGCTTCTCACGGAGATGGATGGTTTTGAGG 7845 Query 175595 ATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCC 175654 | | || ||||| | || ||||| || ||||| | | || || |||||| || | Sbjct 7844 GTAATACCGGCATCATTGTAATTGCTGCTACTAACAGAGCTGACATTCTTGATTCTGCTC 7785 Query 175655 TCCTTCGCCCGGGTCGTTTTGATCG 175679 | || | || || || ||||| || Sbjct 7784 TGCTGAGGCCAGGACGATTTGACCG 7760 >seq37979 Length=12753 Score = 113 bits (124), Expect = 5e-20 Identities = 248/372 (67%), Gaps = 15/372 (4%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 ||||| || ||||||||||| || ||| ||||| || || || || ||||| || Sbjct 10056 CCAGGCACTGGAAAGACCCTACTAGCCAAGGCCATAGCAGGGGAGGCAGGAGTCCCCTTT 10115 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || ||| | | | || | ||||||||||| || || || || ||||| Sbjct 10116 TTCTCCCTCTCCGGTTCTGAGTTCATTGAGATGTTTGTCGGAGTTGGGGCGTCGAGGGTA 10175 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 || || | || | | || | |||| ||| || | |||||||||||||||||| Sbjct 10176 CGAGACTTGTTCAACAAGGCAAATGCAAATGCACCTTGCCTGGTCTTCATTGATGAGATT 10235 Query 175495 GATGCGGTGGGCAAGCAACG------CAGCGCTGGTGGTATGCCAGCAAATGACGAGAGA 175548 |||||||| || | ||| | | || |||||| | |||||||||||| Sbjct 10236 GATGCGGTAGGGAGACAAAGAGGGACCGGCATAGGTGGT------GGAAATGACGAGAGG 10289 Query 175549 GAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT---GACAATGAGACTGGC 175605 || || || | ||||| | || || ||||||||||| ||| | ||| | |||| Sbjct 10290 GAGCAGACCTTGAATCAGTTGCTTACTGAGATGGATGGGTTTAGCGGTAATAATGCTGGT 10349 Query 175606 ATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCG 175665 |||| |||||||| || || |||||| || || |||||| | ||| | ||| | || Sbjct 10350 GTTGTTGTTATTGCTGCTACAAATCGCCCTGAGATTCTTGATCAAGCCTTGCTTAGACCT 10409 Query 175666 GGTCGTTTTGAT 175677 ||| | |||||| Sbjct 10410 GGTAGATTTGAT 10421 >seq6823 Length=41093 Score = 91.5 bits (100), Expect = 2e-13 Identities = 160/228 (70%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 75129 GGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACGG 75187 |||| | ||| | || ||| |||||| ||||||||||||||| | || || | | || Sbjct 37739 GGGATTTTGACTATGATTATTTTGGTTTCAAAACCCTTGAGAGGTCATACCTGTTGAAGG 37680 Query 75188 CTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATC 75247 || |||| | | |||| | ||||| ||||| | ||| | || ||| | |||||| Sbjct 37679 -TCAATGGGAAGGTTGTGGAGAGACCACAACACATGATAATGAGAGTTGCAGTAGGCATC 37621 Query 75248 CACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGTT 75306 ||| ||| || ||||||| | | | || ||| | | ||||| || |||| ||| Sbjct 37620 CACAAGGAGGATGTTGATTCAGCCATTTCAACTTACCATTATATGTCTCAGAGGTG-GTT 37562 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 | ||| || |||| ||||||||||| ||||| || ||||| || || Sbjct 37561 TACTCATGCTTCACCGACCCTCTTCAACGCTGGCACGCCAAGGCCTCA 37514 >seq2381 Length=21385 Score = 89.7 bits (98), Expect = 6e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 || || || ||||| | |||| ||||| ||||| || || || |||||||| || Sbjct 14136 TCGTTTGCAGAGCGAATAATTGCATTTGCTTGTGTTGAAGGGATATTCTTCTCTGGAAGC 14077 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 ||||||||||| | ||| |||| ||||| ||| | ||||| || ||| |||||| || Sbjct 14076 TTCTGCGCTATATTCTGGCTGAAAAAGCGTGGTTTAATGCCTGGACTAACCTTCTCTAAC 14017 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCA 65216 || | ||||| ||||| || || || || Sbjct 14016 GAGTTAATTTCTCGAGACGAAGGGCTTCA 13988 >seq108 Length=40423 Score = 87.8 bits (96), Expect = 2e-12 Identities = 248/378 (66%), Gaps = 26/378 (7%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 |||||||||||||| || | || || ||||| |||| ||||| || || || ||| Sbjct 18967 CCAGGTACGGGAAAAACGTTGCTGGCAAGAGCCGTCGCTGGTGAGGCAGGAGTACCGTTC 19026 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || || | || | | ||||| ||| ||||||| || || || || | || ||| Sbjct 19027 TTCTCATGTGCAGCTTCTGAGTTTGTAGAGTTGTTTGTCGGGGTTGGGGCAAGTAGAGTT 19086 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAA----CCATGTATTGTCTTCATTGATGA 175490 | || | ||||| | || || | ||| || || ||||| || |||||||| Sbjct 19087 AGGGACTTGTTTGA----GAAGGCAAAGAGCAAGGCGCCTTGCATTGTGTTTATTGATGA 19142 Query 175491 GATTGATGCGGTGGGCAAGCA-----ACGCAGCGCT-GGTGGTATGCCAGCAAATGACGA 175544 ||| |||||||| || | ||| |||| | | |||||| | |||||| || Sbjct 19143 GATAGATGCGGTTGGGAGGCAGAGAGGGGCAGGGATGGGTGGT------GGAAATGATGA 19196 Query 175545 GAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGG---CTTTGACAATGAGAC 175601 ||| || || || |||||||| | | || ||||||||||| || || ||| | Sbjct 19197 GAGGGAGCAGACTATTAATCAGTTGTTGACTGAGATGGATGGGTTCTCTGGGAATTCGGG 19256 Query 175602 TGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCG 175661 || |||||| | || || |||||| | ||| | |||||| ||| | | | Sbjct 19257 TGTTATTGTG---TTGGCTGCTACTAATAGGCCCGATGTTCTTGATTCAGCCTTGTTGAG 19313 Query 175662 CCCGGGTCGTTTTGATCG 175679 |||||| | |||||||| Sbjct 19314 ACCGGGTAGGTTTGATCG 19331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594274895033600