Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq1 536 1e-147 >seq1 Length=146306 Score = 536 bits (594), Expect = 1e-147 Identities = 711/984 (72%), Gaps = 2/984 (0%) Strand=Plus/Minus Query 7882 TCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATA 7941 ||| ||| |||||||||| |||||||| || ||||| | ||||||||||||||||||| Sbjct 88858 TCAACAGCAGCTAAGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 88799 Query 7942 CCTAAGTTTGCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCA 8001 || | ||| || | ||| | | ||| |||| ||| ||| | ||| | | |||| Sbjct 88798 CCAAGGTTAGCACGGTTAATGATATCAGCCCAAGTATTAATTACACGACCTTGACTATCA 88739 Query 8002 ACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATA 8061 || || |||||||| || || || || || | ||| || ||||| |||| |||||| | | Sbjct 88738 ACTACAGATTGGTTGAAATTGAAACCATTTAAGTTGAACGCCATAGTGCTAATACCTAAA 88679 Query 8062 GAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTG 8121 | ||| ||||||| || ||| || || | | ||| | ||||||||| | | | | Sbjct 88678 GCAGTAAACCAAATACCTACTACCGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAA 88619 Query 8122 TTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAAT 8180 || || |||| | ||||| ||||||||||||| |||||| || ||||||||||| || || Sbjct 88618 TTATTGAAACTA-GCATATTGGAAGATTAATCGACCAAAATAACCATGAGCAGCTACGAT 88560 Query 8181 ATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGT 8240 |||||| || ||||| |||||||| || | ||||| | || ||| || | ||| || Sbjct 88559 ATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGT 88500 Query 8241 TGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCC 8300 || || ||||| | | ||| || || || ||||| ||||||||||| || || || || Sbjct 88499 GGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCC 88440 Query 8301 ACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGC 8360 ||||| | ||| ||||| || ||| || || || |||||||| ||||| ||||| || Sbjct 88439 GCCGAATACACCAGCTACACCCAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGC 88380 Query 8361 TTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAA 8420 |||||||| | ||||||||| || ||||||||||| ||||||||||| |||||||| || Sbjct 88379 CTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAA 88320 Query 8421 TGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACT 8480 || ||||| | ||| || | ||||| || || ||| || | || ||||| Sbjct 88319 ACTTCCTTGACCGATTGGGTAGATCAAGAAAACCGCAGTAGCCGCCGCAACCGGAGCTGA 88260 Query 8481 ATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACC 8540 |||||| ||| ||||| || | |||||| | ||| | | ||||||| | ||| Sbjct 88259 ATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACC 88200 Query 8541 CATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTT 8600 ||| ||| || | |||| | |||||| | | || | || ||| ||||| || || Sbjct 88199 CATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATT 88140 Query 8601 ATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGC 8660 || ||||||||||| | | || |||||||| || ||||| ||||| || || ||||| Sbjct 88139 GTATAACCACTCATCAACAGATGCTGCTTCCCATATTGGATAAAAGTGCAACCCTATAGC 88080 Query 8661 GTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGC 8720 |||| |||| | |||||||| || || |||||||| || | | || || | Sbjct 88079 TGCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGA 88020 Query 8721 AACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAA 8780 |||||||||||||||||| || ||||| || || ||||||||||| || || | ||||| Sbjct 88019 AACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCTATAATAAA 87960 Query 8781 GCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAG 8840 || || |||| || || ||| ||||| | ||| |||||||| |||| ||||| Sbjct 87959 TACAGAAGTTGCAGTCAATAATGTAGGGATCATCAAAACACCAAACCACCCGATGTAAAG 87900 Query 8841 TCTGTTGTTTGTACTTGTAACCCA 8864 | ||| | || || || | ||| Sbjct 87899 GCGGTTTTCGGTGCTGGTTATCCA 87876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613493485278400