Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq1 477 3e-130 >seq1 Length=146306 Score = 477 bits (528), Expect = 3e-130 Identities = 680/954 (71%), Gaps = 6/954 (1%) Strand=Plus/Plus Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTGCCGCTACA 41320 ||||| ||||| | || ||||| || || | ||||| || | | | ||| | | || Sbjct 87894 AACCGCCTTTACATCGGGTGGTTTGGTGTTTTGATGATCCC-TACATTATTGAC--TGCA 87950 Query 41321 ACTTGT---TTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGA 41377 |||| | |||||||| ||||| ||| || || || || || || ||||| || || Sbjct 87951 ACTTCTGTATTTATTATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGT 88010 Query 41378 GAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCG 41437 ||||| || |||| || || | || || ||||| || || || || ||| | |||| Sbjct 88011 GAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCCATTATTCCT 88070 Query 41438 AGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAA 41497 | | || || || | ||||| || ||||| |||||||| || | ||||||| Sbjct 88071 ACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATATGGGAAGCAGCATCTGTTGATGAG 88130 Query 41498 TGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTT 41557 ||| | ||||| || ||||| | | || | || | |||||| | |||| || | Sbjct 88131 TGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT 88190 Query 41558 GCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTT 41617 ||| ||||| || |||||||||||||| | || || || ||| | || ||||| | Sbjct 88191 TGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCT 88250 Query 41618 GTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGA 41677 ||||| || || ||||| || || || || ||||| || ||| | | || || | || Sbjct 88251 GTTGCATATTCAGCTCCGGTTGCGGCGGCTACTGCGGTTTTCTTGATCTACCCAATCGGT 88310 Query 41678 CAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTG 41737 || || ||||||||||| |||||| | || || || || || ||||||| |||| | Sbjct 88311 CAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 88370 Query 41738 GTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGC 41797 || ||||||||||||||||| || |||||||| || ||||||||| ||||||| || || Sbjct 88371 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAGCTGGT 88430 Query 41798 GTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATT 41857 ||||| || || | || ||||||||| ||| | |||| || || | || Sbjct 88431 GTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATC 88490 Query 41858 CGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAG 41917 | || || || ||| | | || || | ||||||| || |||||||||||||| Sbjct 88491 AGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAA 88550 Query 41918 ACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGC 41977 ||||| ||||| || |||||||| || ||||||||||| | ||||||||||||||||| Sbjct 88551 ACTTATAATATCGTAGCTGCTCATGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGT 88610 Query 41978 TTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGG 42037 || |||||||| ||| | | || ||||| | ||||| ||||| || |||||||||||| Sbjct 88611 TTCAATAATTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCGGTAGTAGGTATTTGG 88670 Query 42038 TTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAA 42097 ||| |||| | || | || ||||| |||||||| ||||||||||| || |||||| Sbjct 88671 TTTACTGCTTTAGGTATTAGCACTATGGCGTTCAACTTAAATGGTTTCAATTTCAACCAA 88730 Query 42098 TCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCC 42157 ||| | | | | | | || | || || || || |||||||| || |||||||||| Sbjct 88731 TCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATCATTAACCGTGCT 88790 Query 42158 AACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGAC 42211 |||||||| | || || |||||||| || || || || |||||||| || ||| Sbjct 88791 AACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGAC 88844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145680106994880