Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq1 563 2e-156 >seq1 Length=146306 Score = 563 bits (624), Expect = 2e-156 Identities = 723/989 (73%), Gaps = 6/989 (1%) Strand=Plus/Plus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||||||| | || || | ||||| ||||| | ||||||||| Sbjct 87858 TGGGGTCGCTTCTGTAACTGGATAACCAGCACCGAAAACCGCCTTTACATCGGGTGGTTT 87917 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGT-TTTATTGTCGCTTTCA 42397 ||||| ||||||| |||| | | | |||| || | ||| |||||| | || |||| Sbjct 87918 GGTGTTTTGATGAT-CCCTACATTATTGACTGCAACTTC-TGTATTTATTATAGCCTTCA 87975 Query 42398 TTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGT 42457 ||||||| ||||| ||||| |||||||| |||||||||||||| ||||| ||||| || | Sbjct 87976 TTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTT 88035 Query 42458 ATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATT 42517 | || ||||| || || ||||||||| | | |||| | || || || | || | Sbjct 88036 ACGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACT 88095 Query 42518 TGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATC 42577 | ||| | || |||||||| | |||| || ||| | |||||||| || |||||| Sbjct 88096 TTTATCCAATATGGGAAGCAGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATG 88155 Query 42578 AGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAAC 42637 |||| | || | |||||| | | ||| | | ||| |||| || || ||||||| Sbjct 88156 AGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAAC 88215 Query 42638 TTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTG 42697 || | ||| || || ||| | || ||||| |||||| || || || || || || | Sbjct 88216 TTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCGGTTGCGG 88275 Query 42698 CAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGC 42757 | || ||||| || ||| | |||| ||| | || ||||| |||||| ||||| |||| Sbjct 88276 CGGCTACTGCGGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGC 88335 Query 42758 CTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTC 42817 |||| || ||||| ||||| |||||||||||| | || ||||||||||| || ||||| | Sbjct 88336 CTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCC 88395 Query 42818 TTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAG 42877 ||||||| || || || ||| | ||||| || || ||||| || || || | || | Sbjct 88396 TTATGCACCCATTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTG 88455 Query 42878 CTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCC 42937 ||||||||||| | || || ||| | | | | ||||| || ||||| ||| Sbjct 88456 CTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTG 88515 Query 42938 AAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATG 42997 ||| | || |||| |||||||||||||| || |||||||| || || || || |||| Sbjct 88516 CTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATG 88575 Query 42998 GTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCAC 43056 |||| ||||| || | |||||||||||||| | |||| |||||| ||| ||||| ||| Sbjct 88576 GTTATTTTGGTCGATTAATCTTCCAATATGC-TAGTTTCAATAATTCTCGTTCTTTACAC 88634 Query 43057 TTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACT 43116 ||||| | || |||||||| || || || |||||||| ||| || | || | || ||| Sbjct 88635 TTCTTCTTAGCTGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACT 88694 Query 43117 ATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCAT 43176 |||||||| ||||| |||||||| || || |||||||| | ||||||| ||| || | Sbjct 88695 ATGGCGTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGT 88754 Query 43177 GTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCAC 43236 || || ||||||||||||||| | || ||||| |||||||| | || || ||||| Sbjct 88755 GTAATTAATACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCAT 88814 Query 43237 GAGCGGAATGCACATAACTTCCCGCTTGA 43265 || || ||||| ||||||||||| || || Sbjct 88815 GAACGTAATGCTCATAACTTCCCTCTAGA 88843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143008306030560