Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq1 477 3e-130 >seq1 Length=146306 Score = 477 bits (528), Expect = 3e-130 Identities = 700/985 (71%), Gaps = 4/985 (0%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||||||| || || ||||||||||||||||| || ||||||||||| | || |||||| Sbjct 88849 GCTAAGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 88790 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||||||||| ||| |||| || | | ||| ||||| || Sbjct 88789 GCACGGTTAATGATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTACAGAT 88730 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || |||||||||| ||| || ||||| |||| ||||| | || || | | Sbjct 88729 TGGTTGAAATTGAAACCATTTAAGTTGAACGCCATAGTGCTAATACCTAAAGCAGTAAAC 88670 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || || |||||||||| ||| | ||||| || | |||||| ||||| ||| Sbjct 88669 CAAATACCTACTACCGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAATTATTGAAA 88610 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || ||||| || || ||||||| ||||| || || || ||||| || |||||||| || Sbjct 88609 CTAGCATATTGGAAGATTAATCGACCAAAATAACCATGAGCAGCTACGATATTATAAGTT 88550 Query 26177 TCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCA 26236 ||||| ||||| || || | || || | ||| || | | ||||| ||||| Sbjct 88549 TCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 88490 Query 26237 ATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACC 26296 || | ||||| ||||| || ||||||||| || || | || ||||| || Sbjct 88489 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACA 88430 Query 26297 CCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACG 26356 ||||| ||||| ||| || ||||||||||| || || || || || || |||||||| Sbjct 88429 CCAGCTACACCCAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 88370 Query 26357 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGT 26416 | ||| ||||| ||||||||||| || || |||||||| |||||| |||||| ||||| Sbjct 88369 ATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGA 88310 Query 26417 CCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACA 26476 |||| || || | ||||| || || ||| || | | || |||| |||||||||| Sbjct 88309 CCGATTGGGTAGATCAAGAAAACCGCAGTAGCCGCCGCAACCGGAGCTGAATATGCAACA 88250 Query 26477 AATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCT 26536 ||||| || | ||| || || | | || |||||||||| | || ||| Sbjct 88249 GCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAA 88190 Query 26537 GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCAC 26596 ||||| || | ||||||||| | | ||| || | ||| || || |||||||||| |||| Sbjct 88189 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCAC 88130 Query 26597 TCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAG 26656 || || | | | |||||||| || || ||||| || | || || || ||| | Sbjct 88129 TCATCAACAGATGCTGCTTCCCATATTGGATAAAAGTGCAACCCTATAGCTGCAGAAGTA 88070 Query 26657 GGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCA 26716 || | | || || || || |||||||||||||| | || || || ||||| || ||| Sbjct 88069 GGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGTTCA 88010 Query 26717 CGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGT 26775 || || ||||| |||||||| || || || || |||||||| | ||||| ||| | ||| Sbjct 88009 CGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCTATAATAAATACA-GAAGT 87951 Query 26776 GGCTGCGAGTAA-GCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCT 26834 || | | ||| | |||| ||||| | || || ||||| || | || || ||||| | Sbjct 87950 TGCAGTCAATAATGTAGGG-ATCATCAAAACACCAAACCACCCGATGTAAAGGCGGTTTT 87892 Query 26835 CAGTACTTGTAACCCACTCACAAAA 26859 | || || || | ||| | ||| || Sbjct 87891 CGGTGCTGGTTATCCAGTTACAGAA 87867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147172234502400