Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq1 581 4e-161 >seq1 Length=146306 Score = 581 bits (644), Expect = 4e-161 Identities = 715/974 (73%), Gaps = 12/974 (1%) Strand=Plus/Plus Query 154993 GACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTGCT 155052 || |||||| | || |||| ||||| |||||| | ||||||||| | | |||| Sbjct 87891 GAAAACCGCCTTTACATCGGGTGGTTTGGTGTTTTGATGATCCCTACATTATTGACTGCA 87950 Query 155053 GCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGT 155112 || | || ||| | |||||||||||||| ||||| ||||| ||||||||||||||| Sbjct 87951 ACTTCTGTATTTATTATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGT 88010 Query 155113 GAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCT 155172 ||||| || |||| ||| || | || || ||||| || || |||||||| || | ||| Sbjct 88011 GAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCCATTATTCCT 88070 Query 155173 AGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAG 155232 | ||| || || || | ||||| ||||| || |||||||||||| || |||||||| Sbjct 88071 ACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATATGGGAAGCAGCATCTGTTGATGAG 88130 Query 155233 TGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACA 155292 ||||| |||||||||||||||| | || | || | |||||| | | || | | Sbjct 88131 TGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT---A 88187 Query 155293 GCATACTGT---GGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATC 155349 || | | | |||||| ||||||||||| || |||||| || |||||||||||||| Sbjct 88188 GCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATT 88247 Query 155350 TGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTC 155409 ||||||||| || || || || | || || || || ||| | | || || || Sbjct 88248 GCTGTTGCATATTCAGCTCCGGTTGCGGCGGCTACTGCGGTTTTCTTGATCTACCCAATC 88307 Query 155410 GGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATG 155469 |||||||| ||| ||||||| |||||||| || || ||||||||||| |||| ||| Sbjct 88308 GGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATG 88367 Query 155470 TTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCA 155529 | || ||||| || || ||||| |||||||||||||| || |||||| | || ||||| Sbjct 88368 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAGCT 88427 Query 155530 GGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTA 155589 ||||| ||||| || || || || ||||||||| ||||| ||||| || ||| | Sbjct 88428 GGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTG 88487 Query 155590 ATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAA 155649 ||| | ||||| || || | || ||| || | ||||||| ||||| ||||| ||| Sbjct 88488 ATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAA 88547 Query 155650 GAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCA 155709 ||||||||||| || || ||||||||||| || || ||||| | |||||||| ||||| Sbjct 88548 GAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGTCGATTAATCTTCCAATATGCT 88607 Query 155710 TCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATC 155769 ||||| || || | | | ||||||||| | ||||| ||||| || || | || Sbjct 88608 AGTTTCAATAATTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCGGTAGTAGGTATT 88667 Query 155770 TGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAAC 155829 ||| |||||| | ||| | || ||||| |||||| | || |||||||| |||||| Sbjct 88668 TGGTTTACTGCTTTAGGTATTAGCACTATGGCGTTCAACTTAAATGGTTTCAATTTCAAC 88727 Query 155830 CAGTCTGTAGTAGACGCTAGT---GGTAAAGTCATCCCTACATGGGCAGACATTCTTAAC 155886 || |||||||| || |||| ||| || || ||| ||||| || || ||||| Sbjct 88728 CAATCTGTAGTTGA---TAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATCATTAAC 88784 Query 155887 CGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGAC 155946 || ||| |||||||||||||| ||||| || ||||| ||||| ||||||||||| ||| Sbjct 88785 CGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGAC 88844 Query 155947 CTTGCTGCTGCTGA 155960 | ||||||| ||| Sbjct 88845 TTAGCTGCTGTTGA 88858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582585631403200