Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq1 522 8e-144 >seq1 Length=146306 Score = 522 bits (578), Expect = 8e-144 Identities = 713/993 (72%), Gaps = 2/993 (0%) Strand=Plus/Minus Query 40524 TCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 40583 ||| ||| ||||||||||||||| ||||| ||||| ||||| || ||||| ||||||||| Sbjct 88858 TCAACAGCAGCTAAGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 88799 Query 40584 CCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCT 40643 || || | | ||||| | ||||||||||||| ||| || ||| | | || Sbjct 88798 CCAAGGTTAGCACGGTTAATGATATCAGCCCAAGTATTAATTACACGACCTTGACTATCA 88739 Query 40644 ACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATG 40703 ||||| || ||||| || || |||||||| | ||| || |||||||| ||||| | Sbjct 88738 ACTACAGATTGGTTGAAATTGAAACCATTTAAGTTGAACGCCATAGTGCTAATACCTAAA 88679 Query 40704 GAGGTAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTA 40763 | |||| ||| || || | ||||| ||||| | | |||||||||| | ||| | Sbjct 88678 GCAGTAAACCAAATACCTACTACCGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAA 88619 Query 40764 TTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATG 40823 || ||||| ||||||||| || |||| || |||||| ||||| || ||||||||||| Sbjct 88618 TTATTGAAACTAGCATATTGGAAGATTAATCGACCAAAATAACCATGAGCAGCTACGATA 88559 Query 40824 TTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTG 40883 |||||||| || | || ||||| || | || || | || |||||| |||| ||| Sbjct 88558 TTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 88499 Query 40884 GTCTCCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCA 40943 || |||| || | ||||| || | | || ||||||||| ||| | | || Sbjct 88498 GTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCG 88439 Query 40944 CCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCT 41003 || || || || || || || | ||| || ||||||||||| || |||||||| || || Sbjct 88438 CCGAATACACCAGCTACACCCAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCC 88379 Query 41004 TGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAA 41063 ||||| |||| |||||||||||| || ||| ||||||| ||||||||||||||| ||| Sbjct 88378 TGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAA 88319 Query 41064 GAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTG 41123 || ||||||| ||| || | ||||| || || ||| || | | ||||||| Sbjct 88318 CTTCCTTGACCGATTGGGTAGATCAAGAAAACCGCAGTAGCCGCCGCAACCGGAGCTGAA 88259 Query 41124 TATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCA 41183 ||||| ||| ||||| || | |||||| || | | | ||||||||||| | ||| Sbjct 88258 TATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCC 88199 Query 41184 GCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTG 41243 || ||||| || | ||| ||||| | ||||| || | ||| || || || ||| Sbjct 88198 ATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTG 88139 Query 41244 TATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCG 41303 |||| |||||| || | | | |||||||| ||||| || || || | || || || Sbjct 88138 TATAACCACTCATCAACAGATGCTGCTTCCCATATTGGATAAAAGTGCAACCCTATAGCT 88079 Query 41304 TTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAA 41363 ||| | |||| | || ||||| ||||||||||| ||||| | || || || ||| Sbjct 88078 GCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAA 88019 Query 41364 ACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA- 41422 || || ||||| || ||||| |||||||| || || || || || ||||| || || || Sbjct 88018 ACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCTATAATAAAT 87959 Query 41423 ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAG 41482 ||| | || ||||| | ||||| || ||||| | ||||||||||| || | ||| || Sbjct 87958 ACA-GAAGTTGCAGTCAATAATGTAGGGATCATCAAAACACCAAACCACCCGATGTAAAG 87900 Query 41483 GCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 |||||| |||||||| || | ||||||||| || Sbjct 87899 GCGGTTTTCGGTGCTGGTTATCCAGTTACAGAA 87867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143177286282480