Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq1 607 9e-169 >seq1 Length=146306 Score = 607 bits (672), Expect = 9e-169 Identities = 733/995 (74%), Gaps = 12/995 (1%) Strand=Plus/Minus Query 67353 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATT 67412 ||| ||||||| | ||| ||||||||||| ||||| ||||| || |||||||||||||| Sbjct 88858 TCAACAGCAGCTAAGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 88799 Query 67413 CCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG--- 67469 ||||| || | ||||| ||| || ||||||||| ||| || || |||| Sbjct 88798 CCAAGGTTAGCACGGTTAATGATATCAGCCCAAGTATTAATTAC---ACGACCTTGACTA 88742 Query 67470 TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCC 67529 ||||| || ||||||||||| |||||||| || | |||||| |||||||| | ||| Sbjct 88741 TCAACTACAGATTGGTTGAAATTGAAACCATTTAAGTTGAACGCCATAGTGCTAATACCT 88682 Query 67530 ATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTT 67589 | ||||| ||||| || | || || || | ||||| | ||||||||| | | | Sbjct 88681 AAAGCAGTAAACCAAATACCTACTACCGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGA 88622 Query 67590 GAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACA 67649 || || |||||| ||||| |||||||| || ||||| || || ||||||||||| || Sbjct 88621 GAATTATTGAAACTAGCATATTGGAAGATTAATCGACCAAAATAACCATGAGCAGCTACG 88562 Query 67650 ATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCA 67709 || || ||||| ||||| ||||| ||||| ||||||| | || || || | || Sbjct 88561 ATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCT 88502 Query 67710 GTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAA 67769 || ||||| ||||| | | |||||| || | ||||| |||||||||||||| || || Sbjct 88501 GTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAG 88442 Query 67770 CCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCT 67829 || ||||||||||| ||||| || | ||| || |||||||||||||||||||||||||| Sbjct 88441 CCGCCGAATACACCAGCTACACCCAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCA 88382 Query 67830 GCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAG 67889 || ||||| || | |||| |||| |||||||||||||| || |||||||| | ||||| Sbjct 88381 GCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAA 88322 Query 67890 AAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCA 67949 ||| |||||||||| || |||| |||||| || || || || | || ||||| Sbjct 88321 AAACTTCCTTGACCGATTGGGTAGATCAAGAAAACCGCAGTAGCCGCCGCAACCGGAGCT 88262 Query 67950 GAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGA 68009 || ||||| ||| ||||||||||||||||| |||||| || ||||||||||| |||| Sbjct 88261 GAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGA 88202 Query 68010 CC---ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCA 68066 || | | | ||| | || | | |||||| | || | || | |||| ||| Sbjct 88201 CCCATATAACAAGCT---ACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCA 88145 Query 68067 CCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCG 68126 ||||| || ||||||||||| | || |||||||||||| || ||||| ||||| | || Sbjct 88144 CCATTGTATAACCACTCATCAACAGATGCTGCTTCCCATATTGGATAAAAGTGCAACCCT 88085 Query 68127 ATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAA 68186 || || ||| |||||| || ||||||||||| || ||||| ||||| | || || Sbjct 88084 ATAGCTGCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGAT 88025 Query 68187 CCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATG 68246 || | ||||||||| | |||||||| ||||| |||||||| || |||||||| || || Sbjct 88024 CCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCTATA 87965 Query 68247 ATGAAGCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAACA 68306 || || || | ||| | | || ||| |||||||| ||||| ||||| || | Sbjct 87964 ATAAATACAGAAGTTGCAGTCAATAATGTAGGGATCATCAAAACACCAAACCACCCGATG 87905 Query 68307 TAGATGCGATTGTCAACTGAGGTGACCCAGTTACA 68341 || | ||| || || ||| | ||||||||| Sbjct 87904 TAAAGGCGGTTTTCGGTGCTGGTTATCCAGTTACA 87870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564766437595200