Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq1 679 0.0 >seq1 Length=146306 Score = 679 bits (752), Expect = 0.0 Identities = 736/973 (76%), Gaps = 2/973 (0%) Strand=Plus/Minus Query 67834 TCAGCAGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATA 67893 ||| ||||||| | ||| ||||||||||| || || ||||| |||||||||||||||||| Sbjct 88858 TCAACAGCAGCTAAGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 88799 Query 67894 CCCAAACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCA 67953 || | ||| ||||| | | || ||||| ||| | || ||| ||||||| Sbjct 88798 CCAAGGTTAGCACGGTTAATGATATCAGCCCAAGTATTAATTACACGACCTTGACTATCA 88739 Query 67954 AGGATAGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGT 68013 | | ||| |||||||| ||||||||||| | |||||| ||||| ||||||| ||| | Sbjct 88738 ACTACAGATTGGTTGAAATTGAAACCATTTAAGTTGAACGCCATAGTGCTAATACCTAAA 88679 Query 68014 GCAGTGAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAG 68073 ||||| ||||| ||||| || || ||||| ||||| | ||||||||| | ||||| || Sbjct 88678 GCAGTAAACCAAATACCTACTACCGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAA 88619 Query 68074 TTGTTGAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATG 68133 || ||||| ||||| |||||||| | ||||| || || ||||| ||||| || || Sbjct 88618 TTATTGAAACTAGCATATTGGAAGATTAATCGACCAAAATAACCATGAGCAGCTACGATA 88559 Query 68134 TTGTAAGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTG 68193 || ||||| ||||| ||||||||||| ||||||| | || || ||| |||| ||| Sbjct 88558 TTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 88499 Query 68194 GTTTCACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCA 68253 ||||| | | || |||||| |||| |||||||||||| ||||| || || || || Sbjct 88498 GTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCG 88439 Query 68254 CCAAATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCT 68313 || ||||| ||||| || || | ||| || || |||||||| |||||||||||||| || Sbjct 88438 CCGAATACACCAGCTACACCCAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCC 88379 Query 68314 TGGAACACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAAC 68373 ||||| || | |||| ||||||||||||||||||| || |||||||| | ||||| || Sbjct 88378 TGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAA 88319 Query 68374 GAACCTTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAG 68433 |||||||||| || |||| || ||| || || | || || ||||| || || || Sbjct 88318 CTTCCTTGACCGATTGGGTAGATCAAGAAAACCGCAGTAGCCGCCGCAACCGGAGCTGAA 88259 Query 68434 TATGCAACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCC 68493 ||||||||| ||||||||||||||||| ||||| | ||||||||| ||||| ||| Sbjct 88258 TATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCC 88199 Query 68494 ATGTATGCAAAGATACCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACCATTG 68553 || || | | ||||| | |||||| | | | || | |||||||||||||| Sbjct 88198 ATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTG 88139 Query 68554 TACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCA 68613 || ||||||||||||| | |||||||||||| || ||||||||||| | || || || Sbjct 88138 TATAACCACTCATCAACAGATGCTGCTTCCCATATTGGATAAAAGTGCAACCCTATAGCT 88079 Query 68614 TTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCA 68673 ||| |||||| || ||||||||||| || ||||| || || || || || |||| | Sbjct 88078 GCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAA 88019 Query 68674 ACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA- 68732 |||||||||||||||||||| || || || || |||||||| |||||||| | || || Sbjct 88018 ACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCTATAATAAAT 87959 Query 68733 ACAGATGGTTGCTGCAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAAG 68792 ||||| ||||| | | | ||||||||||||| || || ||||| || | |||||| Sbjct 87958 ACAGA-AGTTGCAGTCAATAATGTAGGGATCATCAAAACACCAAACCACCCGATGTAAAG 87900 Query 68793 GCGGTTCTCTGTG 68805 |||||| || ||| Sbjct 87899 GCGGTTTTCGGTG 87887 Score = 551 bits (610), Expect = 6e-152 Identities = 738/1021 (72%), Gaps = 4/1021 (0%) Strand=Plus/Plus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 ||||||| || || |||||||| ||||| || || ||||||| || ||||||||| || | Sbjct 57134 ATTAAAGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCT 57193 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705 |||| || |||| ||| ||||||| |||||| || || ||||| || || ||||||| Sbjct 57194 GATCTTGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAGAGAATATTTTTGGTGTAGA 57253 Query 66706 ACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCAC 66765 | ||||| || || || ||||| ||||| | ||| || ||||| || |||||||| |||| Sbjct 57254 AAGTCTCAAATTCAGGATCTTCGGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCAC 57313 Query 66766 GAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAA 66825 | ||||| | || ||||| | | || | | ||| |||| | ||| | || || | Sbjct 57314 GTAGGTTCAAGGCCAGACCGACTACCCCAAGAGCACTCATCCATAAACCGGTTACTGGTA 57373 Query 66826 CAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAG 66885 |||| |||||||||||||| ||||| | |||||| ||| |||| |||||||| || | Sbjct 57374 CAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGG 57433 Query 66886 ACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATG 66945 |||| || ||||| || || |||||||| |||||||| || |||| || | || || | Sbjct 57434 ACCAAAAACGGTTAGCGGTGACCATTGAATAAGTTTCCTCAGCTTGGGTTGGGTTAAAAG 57493 Query 66946 CTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCAT 67005 | ||| || ||||| |||||||||||| | | |||||| ||||| ||| |||||| Sbjct 57494 CCCGGAATGTATTTGCCCCATCACCATCTTCAAATAAAGTATTTTCTACGGTAGCACCAT 57553 Query 67006 GAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGGT 67065 |||| ||| | |||| || | |||| | ||| || || |||||||||||||| |||| Sbjct 57554 GAATAGCACATAGCAGAGCGGCGCCCAATACACCAGCAACCCCCATCATATGAAAAGGGT 57613 Query 67066 TCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCC 67125 ||| ||||| ||||| || ||||| | ||||| | |||||| || || |||| || | Sbjct 57614 TCAGCGTCCAATTATGAAACCCTTGAAAAAAGAGGATGAATCGGAATATGGCTGCTACAC 57673 Query 67126 CGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTAA 67185 | ||| || || || ||||||| || || || || || || || || || ||| || Sbjct 57674 CAAAACTAGGCGCAAAGAACCAACCAGACTGGCCTAGTGGATAAATTAGGAATACAGAAA 57733 Query 67186 CAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGATGAGA- 67244 |||||||||| || || |||||||| || || ||||| || || || | | || ||| Sbjct 57734 CAAAAACAGCAATTGGGCCAGAGAATGCGATTGCATTATAAGGGCGCA-ATTGAACAGAT 57792 Query 67245 CGTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGCGCC 67304 || || ||||| || ||||| | ||| ||||| ||||| ||||||| || || || || Sbjct 57793 CGAGCAAGTTCGAATTGGCGTAACATAAAACCTATTAGTCCGAAAGCGCCATGAAGAGCA 57852 Query 67305 ACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCAGGA 67364 |||||| |||| || || || | ||| ||| || ||||| || || | |||||| Sbjct 57853 ACAAAAGTCCACAGGCCGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGA 57912 Query 67365 CCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCTGTG 67424 ||||| || | | | ||| || | | | || |||||| || || || || || || Sbjct 57913 CCCCACAGCAACAACAAAGAGTGTGCTAAACTATTAGCAGGAGTAGAAACGGCTGCGGTT 57972 Query 67425 AGAAAATTAGCA-CCCTCAAGATAACTAGACGCGAGTCCGTGAGTGTACCAGCTTGTGAC 67483 | ||||| ||| || || | ||| | || | || || || ||||| || || Sbjct 57973 AAGAAATT-GCAGCCTTCCAAATAGGAACTGGCCAACCCATGGGTATACCATGACGTTAC 58031 Query 67484 AAACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGTGGGAAAAAGAAGTAG 67543 |||||| ||||| |||| ||| || || | || | ||||||| ||||| || | ||| Sbjct 58032 AAACGTCGTACCCGTAAACCAACCCCCTACAGCGAAATAAGCACAAGGAAAGAGCAATAG 58091 Query 67544 TCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATCAAGGACATCGAA 67603 ||||||||||| ||||| || || || |||| | ||||||||| | | ||| || Sbjct 58092 ACCAGACCAACCTACAAAAACGAAACGGTCTCTACGTAACCAGTCATCCATAATATCAAA 58151 Query 67604 C 67604 | Sbjct 58152 C 58152 Score = 93.3 bits (102), Expect = 5e-14 Identities = 70/81 (86%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 35503 TCATATAA-CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCT 35561 ||||| || ||||||| |||||||| |||||||||||||||| ||||||| ||| ||| Sbjct 112427 TCATAAAATCTCCCCAAGTAGGATTCGAACCTACGACCAATCAGTTAACAGCCGACCGCT 112486 Query 35562 CTGCCGCTGAGCTACTGAGGA 35582 || || ||||||||||||||| Sbjct 112487 CTACCACTGAGCTACTGAGGA 112507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569853992750400