Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq11074 140 6e-28 seq112514 134 2e-26 seq59535 125 1e-23 seq9218 122 2e-22 seq110967 120 5e-22 seq60406 118 2e-21 seq35076 118 2e-21 seq150073 111 3e-19 seq8115 109 1e-18 seq3774 100 5e-16 seq9871 91.5 3e-13 seq20614 87.8 3e-12 seq12130 87.8 3e-12 >seq11074 Length=8391 Score = 140 bits (154), Expect = 6e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | |||| ||||| ||||| || |||| ||| || | | ||| || Sbjct 689 ACAAGATGAAGAGTAGATTCTTTCTGGATATTGTAATCGGCTAAAGTACGACCATCTTCA 630 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | |||||| || ||||| || | | ||||||||||| || || |||||||| ||||| Sbjct 629 AGTTGTTTACCAGCAAAGATAAGACGTTGTTGATCAGGTGGGATGCCTTCTTTGTCTTGG 570 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||||||| | ||| || || || || || ||||||||||| ||||| ||||| Sbjct 569 ATCTTGGTTTTGACATTGTCGATTGTGTCTGATGATTCAACTTCTAGGGTTATTGTTTTG 510 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTTATT 193366 || ||||| ||||| || ||||| |||||||| || Sbjct 509 CCAGTTAGGGTTTTCACGAATATCTGCATTTTTTT 475 >seq112514 Length=1387 Score = 134 bits (148), Expect = 2e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||| || ||||||| | ||| | | ||| || || || || ||||| ||||| || | Sbjct 430 AATGTTGTAGTCGGCAAGCGTACGACCATCTTCCAACTGCTTACCGGCGAAAATCAAACG 489 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||||| || ||||| || |||||||||||||| || || ||||| | ||| ||||| Sbjct 490 TTGTTGGTCCGGAGGAATACCTTCTTTATCTTGAATCTTAGTTTTGACATTATCTATAGT 549 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| ||| |||||||||| || || |||||||| |||| ||||| || ||||| || Sbjct 550 ATCACTAGATTCAACTTCTAAGGTAATGGTTTTACCAGTTAAGGTTTTCACGAATATCTG 609 Query 193358 CATTTTATTAGT 193369 |||||| ||||| Sbjct 610 CATTTTTTTAGT 621 >seq59535 Length=2228 Score = 125 bits (138), Expect = 1e-23 Identities = 123/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | |||||||||||| || |||| | ||||| || || || ||||||||||| Sbjct 1596 ATCTTCGAGTTGTTTTCCGGCGAAGATTAGACGTTGTTGGTCTGGTGGGATTCCTTCTTT 1655 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||||| ||||||||||| | ||| || || ||||| || ||||| || || || || Sbjct 1656 GTCTTGGATTTTGGTTTTGACATTGTCGATTGTGTCGGAGGATTCAACCTCGAGGGTGAT 1715 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| || ||||| |||||||| || || |||||||| Sbjct 1716 TGTTTTGCCGGTTAGGGTTTTTACGAAGATCTGCATTTT 1754 >seq9218 Length=18002 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| || | || || |||| ||| | || | ||| || |||||| || || Sbjct 14656 ATACCACCCCTGAGACGGAGCACCAAATGGAGAGTCGACTCCTTCTGAATATTGTAATCA 14715 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | || || ||||||||||||||||| || |||||||| ||||| ||| Sbjct 14716 GCTAGGGTACGCCCGTCTTCCAATTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGA 14775 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||||||||| || || || || || | ||| ||| || || || || Sbjct 14776 GGAATCCCTTCTTTATCCTGGATCTTTGTCTTCACATTGTCAATGGTGTCCGAGCTTTCG 14835 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || |||||||| || ||||| || || || || || ||||| Sbjct 14836 ACTTCCAGGGTAATAGTTTTCCCAGTTAGAGTCTTGACGAAAATCTGCAT 14885 >seq110967 Length=1286 Score = 120 bits (132), Expect = 5e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | | ||| || || || || | ||| | ||| || || || || || | Sbjct 651 ACCACCACGAAGTCGTAGGACTAGGTGAAGTGTTGACTCCTTCTGGATGTTGTACTCTGC 710 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 ||| || ||| ||| || | || ||||| ||||| || | || ||||| || || || Sbjct 711 TAAGGTCCTACCATCTTCAAGCTGCTTTCCTGCAAATATCAGTCGTTGTTGGTCTGGTGG 770 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 ||||||||| || ||||| || || ||||| | ||| || ||||| || || || || Sbjct 771 TATTCCTTCCTTGTCTTGGATCTTCGTTTTCACATTATCGATCGTATCTGAGGATTCTAC 830 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| ||||| || || |||||||| ||||| || || || |||||||| Sbjct 831 CTCTAGGGTTATCGTCTTCCCTGTTAGGGTTTTCACGAAGATCTGCATTTT 881 >seq60406 Length=2202 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || || ||||| ||||| || ||||| | || | |||||| ||| ||||| || Sbjct 1327 ATGCCTCCCCTCAACCGAAGCACAAGATGAAGAGTCGACTCTTTCTGAATGTTATAATCA 1386 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | |||| ||| || | ||| || || || || || | ||||| || || ||| Sbjct 1387 GCCAGAGTTCGGCCATCCTCAAGTTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCTGGA 1446 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || || || || ||||||||||| | ||| ||| || |||||| ||| Sbjct 1447 GGAATGCCCTCCTTGTCCTGAATTTTGGTTTTGACATTGTCAATGGTGTCGGAACTCTCG 1506 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || || || ||||| ||||| ||||| |||||||| Sbjct 1507 ACCTCCAGAGTAATTGTCTTGCCAGTTAGGGTTTTCACAAAGATTTGCAT 1556 >seq35076 Length=3390 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || |||||||||| || || |||| ||| | || | |||||| || || ||||| Sbjct 1388 ATCCCACCTCTCAGACGGAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCA 1447 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | ||| || | ||| ||||||||||| || | || || || || ||| Sbjct 1448 GCCAGGGTACGGCCATCCTCAAGTTGCTTTCCGGCAAAGATCAGCCTTTGCTGGTCCGGA 1507 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| ||||| || || |||||||| | ||| ||| || || || |||| Sbjct 1508 GGAATACCTTCCTTATCCTGAATCTTGGTTTTGACATTATCAATGGTGTCTGAGCTCTCA 1567 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || ||||| || || |||||||| ||||| || ||||| Sbjct 1568 ACTTCAAGGGTGATGGTTTTCCCGGTCAGCGTTTTGACAAAAATCTGCAT 1617 Score = 96.9 bits (106), Expect = 6e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 |||||||||||| | || || | ||| || || || || || ||||| || || || Sbjct 1207 AATATTATAGTCAGCCAAAGTGCGCCCATCCTCCAACTGCTTCCCTGCAAAGATCAACCT 1266 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||| ||||| ||||| || ||||| || || || ||||| || || | ||| | ||| Sbjct 1267 CTGCTGATCTGGAGGGATCCCTTCCTTGTCCTGGATTTTCGTCTTAACATTATCGACAGT 1326 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 || ||| ||||||||| || || || || || || || || ||||| || || || || Sbjct 1327 GTCCGAACTCTCAACTTCCAGGGTGATGGTCTTCCCGGTAAGAGTTTTCACGAAAATCTG 1386 Query 193358 CAT 193360 ||| Sbjct 1387 CAT 1389 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || || |||| || || || ||||| | || | |||||| ||| || || || Sbjct 1844 ATTCCTCCCCTCAGACGGAGGACAAGATGGAGAGTGGACTCTTTTTGAATGTTGTAATCA 1903 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | |||| || || | || || || ||||| || | || || || || ||| Sbjct 1904 GCGAGTGTTCGGCCGTCCTCAAGCTGCTTGCCTGCAAAGATCAGCCTTTGCTGGTCTGGA 1963 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || || || || ||||||||||| | ||| || ||||| ||| ||| Sbjct 1964 GGAATGCCCTCCTTGTCCTGAATTTTGGTTTTAACATTGTCGATTGTATCAGAACTCTCG 2023 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || || ||||| || || || ||||| |||||||| Sbjct 2024 ACCTCGAGAGTAATGGTCTTGCCTGTAAGGGTCTTGACAAAGATTTGCAT 2073 >seq150073 Length=1124 Score = 111 bits (122), Expect = 3e-19 Identities = 135/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 |||||||||||| | || || | ||| || || || ||||| ||||| || || || Sbjct 240 AATATTATAGTCAGCCAAGGTGCGGCCATCCTCCAACTGCTTTCCTGCAAAGATCAACCT 181 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 || ||||| || || || ||||| ||||| ||||| || || || | ||| ||||| Sbjct 180 TTGCTGATCTGGCGGGATCCCTTCCTTATCCTGTATCTTTGTCTTGACATTATCGATAGT 121 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| || ||| ||||||| || |||||||| || || | ||||| ||||| ||||| Sbjct 120 ATCAGAGCTCTCCACTTCTAAGGTGATAGTTTTCCCAGTCAAGGTTTTCACAAAAATTTG 61 Query 193358 CATT 193361 |||| Sbjct 60 CATT 57 >seq8115 Length=10241 Score = 109 bits (120), Expect = 1e-18 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | |||||||||||| || || | | |||||| || || || ||||||||||| Sbjct 7341 TCTTCGAGTTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGTGGGATTCCTTCTTTG 7400 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || |||||||| | ||| || || || || || ||||| || || || || Sbjct 7401 TCTTGGATCTTGGTTTTGACATTGTCGATTGTGTCTGAGGATTCAACCTCAAGGGTGATT 7460 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| || ||||| ||||| || || || |||||||| Sbjct 7461 GTTTTCCCAGTTAGGGTTTTCACGAAGATCTGCATTTT 7498 >seq3774 Length=25925 Score = 100 bits (110), Expect = 5e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 |||||| ||||| | || || | ||| || || || || || ||||| || || || Sbjct 8320 AATATTGTAGTCAGCCAAGGTGCGCCCATCCTCCAACTGCTTCCCTGCAAAGATCAACCT 8261 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||| ||||| || || ||||||||||| || || |||||||| || | ||| ||| || Sbjct 8260 CTGCTGATCTGGTGGGATTCCTTCTTTGTCCTGGATTTTGGTCTTAACATTGTCAATGGT 8201 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 || ||| ||||||||| || || || || || || || || || || || || || || Sbjct 8200 GTCAGAACTCTCAACTTCCAGGGTGATGGTCTTCCCGGTAAGGGTCTTCACGAAAATCTG 8141 Query 193358 CAT 193360 ||| Sbjct 8140 CAT 8138 Score = 93.3 bits (102), Expect = 8e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| ||||| ||||| || | || || || || || || |||| ||| || Sbjct 8065 ATCCTCGAGTTGCTTTCCAGCAAAGATCAGCCTTTGCTGGTCTGGGGGGATTCATTCCTT 8006 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 || || ||||||||||| | ||| || || || ||| ||| || || ||||| || Sbjct 8005 GTCCTGAATTTTGGTTTTGACATTGTCGATGGTGTCAGAACTCTCGACCTCGAGAGTGAT 7946 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||| || || || || || ||||| |||||||| Sbjct 7945 AGTTTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 7910 >seq9871 Length=9033 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | || || || || ||||| | || | ||| || || || |||||| Sbjct 918 ATACCACCACGCAGGCGGAGGACAAGATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCG 977 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | |||| || || | |||||| || || || || || | || || || || Sbjct 978 GCGAGAGTTCGGCCGTCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGCTGGTCTGGG 1037 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| |||||||| ||||||||||| | ||| || || ||||| ||| Sbjct 1038 GGAATCCCTTCCTTATCTTGGATTTTGGTTTTGACATTGTCGATTGTGTCGGAGCTCTCG 1097 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || || || || || || || || || |||||||| Sbjct 1098 ACCTCGAGAGTAATTGTCTTTCCGGTCAGAGTCTTAACGAAGATTTGCAT 1147 >seq20614 Length=5371 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || ||||| ||||| || | |||||| ||||| ||||| || || || || || || || Sbjct 2236 TGCTTTCCTGCAAAGATCAGTCTCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGAATC 2177 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || || || | ||| ||| || || ||| ||| || || ||||| || || || || Sbjct 2176 TTAGTCTTGACATTGTCAATGGTGTCTGAACTCTCGACCTCGAGAGTAATGGTCTTGCCG 2117 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || |||||||||||||| Sbjct 2116 GTAAGGGTCTTGACAAATATTTGCAT 2091 >seq12130 Length=7920 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || |||||||||||||| | ||||| || || || || ||||| || ||||| || || Sbjct 5604 TGCTTTCCGGCAAAAATAAGCCTCTGCTGGTCTGGGGGAATTCCCTCCTTATCCTGGATC 5663 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 ||||| || | ||| ||| ||||||||| ||| || || || || ||||| || || Sbjct 5664 TTGGTCTTGACATTGTCAATGGTATCGGAACTCTCCACCTCGAGGGTAATAGTCTTTCCA 5723 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || | || || || || || ||||| Sbjct 5724 GTCAAAGTCTTGACGAAAATCTGCAT 5749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 896193879350400