Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq33024 149 9e-31 seq112514 136 6e-27 seq60406 118 2e-21 seq9218 111 2e-19 seq20614 104 3e-17 seq11074 102 1e-16 seq29279 100 4e-16 seq100015 96.9 5e-15 seq35076 95.1 2e-14 seq31228 91.5 2e-13 seq12130 86.0 9e-12 seq9871 86.0 9e-12 >seq33024 Length=3557 Score = 149 bits (164), Expect = 9e-31 Identities = 371/562 (66%), Gaps = 12/562 (2%) Strand=Plus/Plus Query 18149 TATAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTA 18208 || || ||||| || |||||| |||||| || || |||| || || || ||||| Sbjct 1311 TACAACAAACAGGCGAAATCACAGTGTAACCCCTCGTCTCGAGAAATCAACTCGTTCGAG 1370 Query 18209 AACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTA 18268 || || | ||| ||||||| |||| ||| || ||||||||||||| ||| || | | Sbjct 1371 AAGGTAAGCCCCGGCATTAATCCTCGTTTCTTGAGCCAAAATATCGCGCAGAAGCTTCCA 1430 Query 18269 GAAAAGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTA 18328 || |||||||| || ||||| || ||||| || | | || ||||| ||||| | Sbjct 1431 GAGAAGAATATCCCTTCAACACAAGCGAAAGCGACAATTCGCTCAGCGAAACTCTCCC-- 1488 Query 18329 TTGCTCAGT--ATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCT 18386 | | || ||||| ||||| || | | | | || ||| ||| Sbjct 1489 ---CGCCGTCGATCCAGCGCAAGGCCCAATCAGCCTTGCGCTTGACAGCGGGGATAGTCT 1545 Query 18387 CTATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACA 18446 | | |||| || ||| | |||||| | ||||| || || ||||| || | ||| | Sbjct 1546 CAACAGCACGGAATAAACCCGATTTTTCCTCCGAATCCTTAATGTAAGTCTCCAATAATA 1605 Query 18447 AAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAG 18506 | || |||||||| ||||| || |||| ||||| || ||||| | ||||| | ||| | Sbjct 1606 AGGAGTACATTTCGGAATGGATATTTTCGATAGCGATTTGAAACCCGTAAAATGCTCTCG 1665 Query 18507 CCTCGGGATATTGAATCTCGCT-ATAAAATCTTTCTACCAAATTCTCATTAACTATACCG 18565 | || ||| ||||| || | || ||| | | | |||||| || |||||| Sbjct 1666 CTTCAGGAAGTTGAACTTCCTTCATGAAA-CGACAAGCGAGATTCTCCAGCACAATACCG 1724 Query 18566 TCAGCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGA 18625 |||| | ||||| || || | || | | |||||||| ||||| | | ||| Sbjct 1725 TCAGATGCGGCGAAGAAGGCGAGCACGTGAGTGATGAAATGACGTTCATCGGACGTCAGA 1784 Query 18626 TTGTT---CCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGAT 18682 ||| ||| | | || ||| |||| ||| |||||||| | ||||| ||||| Sbjct 1785 GTGTCGGACCAGTGACGTAAATCGGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAA 1844 Query 18683 GATTCGGCCTGTTTGTACATTT 18704 | |||||| | ||||||||||| Sbjct 1845 GCTTCGGCTTTTTTGTACATTT 1866 >seq112514 Length=1387 Score = 136 bits (150), Expect = 6e-27 Identities = 128/163 (79%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 155816 TAATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGA 155875 ||| |||||||| ||||| | ||||| || ||||| ||||| ||||| |||||||| || Sbjct 619 TAAAAAAATGCAGATATTCGTGAAAACCTTAACTGGTAAAACCATTACCTTAGAAGTTGA 560 Query 155876 AGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCC 155935 | | ||||| ||| || || |||| ||| || |||||||||||||| || ||||| Sbjct 559 ATCTAGTGATACTATAGATAATGTCAAAACTAAGATTCAAGATAAAGAAGGTATTCCTCC 500 Query 155936 AGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || |||||| | ||||||| |||||||||||| | |||||| Sbjct 499 GGACCAACAACGTTTGATTTTCGCCGGTAAGCAGTTGGAAGAT 457 >seq60406 Length=2202 Score = 118 bits (130), Expect = 2e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| ||||||||||| || ||||| | || || || ||| Sbjct 1328 ATGCAGATTTTTGTGAAAACCTTGACTGGAAAGACCATTACCCTCGAGGTTGAGAGCTCT 1269 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || |||| |||||| || ||||| ||||| || || ||||| || Sbjct 1268 GATACTATTGACAATGTCAAAACTAAAATTCAGGATAAGGAAGGTATCCCCCCAGATCAG 1209 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| ||||||||||| || || | | ||||| | |||||||| Sbjct 1208 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGCCGTACTTTGGCTGATTATAAC 1149 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || || ||| |||| || ||||| ||| Sbjct 1148 ATCCAGAAGGAGTCGACCCTCCATTTGGTG 1119 >seq9218 Length=18002 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || || ||||||||||| || ||||| || || |||||| ||| Sbjct 15341 ATGCAGATATTTGTCAAGACTTTGACTGGAAAGACCATTACTTTGGAGGTCGAAAGTTCA 15282 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || | ||| || || ||||| || || || |||||||| || Sbjct 15281 GACACCATTGATAATGTAAAGACTAAGATTCAGGATAAGGAGGGTATTCCTCCAGACCAG 15222 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | ||| || || || ||||| ||| | ||||| | || ||||| Sbjct 15221 CAAAGATTGATCTTTGCTGGAAAACAACTCGAGGATGGTCGTACTTTGGCTGACTATAAC 15162 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || ||| | || ||||| || || Sbjct 15161 ATTCAGAAGGAGTCTACTCTTCACTTGGT 15133 Score = 100 bits (110), Expect = 4e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || | ||||| ||||||||||| | ||||||||| || Sbjct 14885 ATGCAGATTTTCGTCAAGACTCTAACTGGGAAAACTATTACCCTGGAAGTCGAAAGCTCG 14826 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || ||||| | || || || ||||||||||| || |||||||| || Sbjct 14825 GACACCATTGACAATGTGAAGACAAAGATCCAGGATAAAGAAGGGATTCCTCCAGATCAG 14766 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||| | |||||| || || | ||||| | || || | ||||| ||| Sbjct 14765 CAGAGATTGATCTTTGCCGGAAAACAATTGGAAGACGGGCGTACCCTAGCTGATTACAAT 14706 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || || ||| |||| || ||||| ||| Sbjct 14705 ATTCAGAAGGAGTCGACTCTCCATTTGGTG 14676 >seq20614 Length=5371 Score = 104 bits (114), Expect = 3e-17 Identities = 147/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || || | || || || || ||||| | || ||||| ||| Sbjct 2091 ATGCAAATATTTGTCAAGACCCTTACCGGCAAGACCATTACTCTCGAGGTCGAGAGTTCA 2150 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || | ||| || || || || || ||||| |||||||| || Sbjct 2151 GACACCATTGACAATGTCAAGACTAAGATTCAGGACAAGGAGGGCATTCCTCCAGATCAG 2210 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| |||| | ||| || |||||||| |||||| | | ||| | ||||||||| Sbjct 2211 CAGAGACTGATCTTTGCAGGAAAGCAGCTTGAAGATGGCCGCACTCTTGCAGATTATA-- 2268 Query 156003 ATATCCAAA--GAGGCGACGCTTCA 156025 | ||||||| ||| | |||||||| Sbjct 2269 ACATCCAAAAGGAGTCTACGCTTCA 2293 >seq11074 Length=8391 Score = 102 bits (112), Expect = 1e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 155817 AATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAA 155876 || |||||||| ||||| | ||||| | ||||| ||||| || || ||||||| ||| Sbjct 475 AAAAAAATGCAGATATTCGTGAAAACCCTAACTGGCAAAACAATAACCCTAGAAGTTGAA 534 Query 155877 GATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCA 155936 || || | || || || |||| || || ||||| ||||||||||| || || Sbjct 535 TCATCAGACACAATCGACAATGTCAAAACCAAGATCCAAGACAAAGAAGGCATCCCACCT 594 Query 155937 GAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGAT 155996 || |||||| | | || | ||| ||||| || || |||||| | |||||| | ||| Sbjct 595 GATCAACAACGTCTTATCTTTGCTGGTAAACAACTTGAAGATGGTCGTACTTTAGCCGAT 654 Query 155997 TATAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 || ||||| ||||| | || |||||| | || ||| Sbjct 655 TACAATATCCAGAAAGAATCTACTCTTCATCTTGTTTTA 693 >seq29279 Length=3900 Score = 100 bits (110), Expect = 4e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| ||||||||||| || ||||| | | || || ||| Sbjct 2573 ATGCAGATTTTCGTGAAAACCTTGACTGGAAAGACCATTACCCTCGTGGTTGAGAGCTCT 2514 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || | ||| || || |||||||| ||||| || ||||| || Sbjct 2513 GATACCATTGATAATGTCAAGACTAAGATTCAGGATAAAGAGGGCATCCCCCCAGATCAT 2454 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| | || | ||| ||||||||||| || || | | ||||| |||||||||| Sbjct 2453 CAAAGGCTAATCTTTGCTGGTAAGCAGCTGGAGGACGGCCGCACTTTGGCAGATTATAAC 2394 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || || ||| | || || |||| ||| Sbjct 2393 ATCCAGAAGGAGTCCACCCTCTATTTGGTG 2364 >seq100015 Length=1511 Score = 96.9 bits (106), Expect = 5e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 18149 TATAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTA 18208 || || ||||| || || ||| |||||| || || |||| || || || ||||| Sbjct 1219 TACAACAAACAGGCGAAGTCACAGTGTAATCCCTCGTCTCGAGAAATCAACTCGTTCGAG 1278 Query 18209 AACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTA 18268 || || | ||| ||||||| |||| ||| || ||||||||||||| ||| || | | Sbjct 1279 AAGGTAAGCCCTGGCATTAACCCTCGTTTCTTGAGCCAAAATATCGCGCAGAAGCTTCCA 1338 Query 18269 GAAAAGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACT 18321 || |||||||| || ||||| || ||||| || | | || ||||| ||||| Sbjct 1339 GAGAAGAATATCCCTTCAACACAAGCGAAAGCGACAATTCGCTCAGCGAAACT 1391 >seq35076 Length=3390 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | || || | ||||| ||||| ||||| | || ||||| ||| Sbjct 1846 AATGCAGATCTTTGTCAAGACCCTTACTGGCAAAACCATTACTCTTGAGGTCGAGAGTTC 1787 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | ||| ||||| |||| ||| || || || || || ||||| || ||||| || Sbjct 1786 TGACACCATTGACAACGTCAAAACTAAGATTCAGGACAAGGAGGGCATCCCACCAGACCA 1727 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||| | || | ||||||||||||| | || ||| | ||||| | || ||||| Sbjct 1726 GCAAAGGCTTATCTTTGCCGGTAAGCAGTTGGAGGATGGACGTACTTTGGCCGACTATAA 1667 Query 156002 TATATCCAAAGAGGCGACGCTTCAT 156026 ||| || ||| | || || ||| Sbjct 1666 CATACAGAAGGAGTCAACCCTCCAT 1642 >seq31228 Length=3734 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||||| ||||| || || | ||||| || || Sbjct 3319 ATGCAGATTTTTGTGAAGACGCTGACTGGCAAAACCATCACCCTTGAAGTTGAGAGCTCG 3260 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || || | || || ||||| || || || || || ||||| || Sbjct 3259 GACACTATTGACAATGTCAAGACAAAGATCCAAGACAAGGAGGGTATCCCCCCAGACCAG 3200 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| ||||| | ||||||||||||||| || || | ||||| | || ||||| Sbjct 3199 CAAAGGTTGATCTTTGCCGGTAAGCAGCTGGAGGACGGTCGTACTTTGGCCGACTATAAC 3140 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || || ||| | |||||||| || ||| Sbjct 3139 ATCCAGAAGGAGTCTACGCTTCACTTGGTG 3110 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| |||||||||| || ||||| | || ||||| || Sbjct 3547 ATGCAGATTTTTGTGAAAACCCTGACTGGAAAGACCATTACCCTTGAGGTCGAGAGCTCG 3488 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || | ||||| || ||||| || || || |||||||| || Sbjct 3487 GACACAATTGACAATGTCAAGACCAAAATTCAGGATAAGGAGGGTATTCCTCCAGATCAG 3428 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| | || | ||| ||||||||||| || || | | ||||| |||| |||| Sbjct 3427 CAAAGGCTCATCTTTGCTGGTAAGCAGCTGGAGGACGGCCGTACTTTGGCAGACTATA-- 3370 Query 156003 ATATCCAAA 156011 | ||||||| Sbjct 3369 ACATCCAAA 3361 >seq12130 Length=7920 Score = 86.0 bits (94), Expect = 9e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || ||||||||||| |||||||| | || || || ||| Sbjct 5749 ATGCAGATTTTCGTCAAGACTTTGACTGGAAAGACTATTACCCTCGAGGTGGAGAGTTCC 5690 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || | || || || ||||| || || || || ||||| || Sbjct 5689 GATACCATTGACAATGTCAAGACCAAGATCCAGGATAAGGAGGGAATTCCCCCAGACCAG 5630 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | |||| |||||| ||||||||||| || | | || | | ||||| || Sbjct 5629 CAGAGGCTTATTTTTGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCGCTGATTACAAC 5570 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || || ||| | || || ||||| ||||| Sbjct 5569 ATCCAGAAGGAGTCAACACTCCATTTGGTGTT 5538 >seq9871 Length=9033 Score = 86.0 bits (94), Expect = 9e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || ||||||||||| ||||| || | || || || ||| Sbjct 691 ATGCAGATTTTCGTCAAGACGTTGACTGGAAAGACTATCACCCTTGAGGTTGAGAGTTCC 632 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || | ||| || || || || || || || || ||||| || Sbjct 631 GACACCATTGACAACGTCAAGACTAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAG 572 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | |||| || || |||||||||||||| | ||| | | ||||| || Sbjct 571 CAGAGGCTTATTTTCGCTGGAAAGCAGCTCGAAGACGGTCGCACTCTTGCTGATTACAAC 512 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || || ||| ||||||| ||||| ||||| Sbjct 511 ATCCAGAAGGAGTCGACGCTCCATTTGGTGTT 480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729056854352000