Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20
2015-10-23] 307,720 sequences; 665,278,925 total letters
Query= NC_021530.1
Length=171407
Score E
Sequences producing significant alignments: (Bits) Value
seq1 598 5e-166
>seq1
Length=146306
Score = 598 bits (662), Expect = 5e-166
Identities = 732/994 (74%), Gaps = 4/994 (0%)
Strand=Plus/Plus
Query 157580 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 157639
||||| | ||| |||| ||| | |||||||| || |||| ||||| || || ||
Sbjct 87867 TTCTGTAACTGGATAACCAGCACCGAAAACCGCCTTTACATCGGGTGGTTTGGTGTTTTG 87926
Query 157640 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 157698
||||| || || | ||| | ||||| ||||| || || | |||||| | ||||||||
Sbjct 87927 ATGATCCCTACATTATTGACTGCAACT-TCTGTATTTATTATAGCCTTCATTGCTGCTCC 87985
Query 157699 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 157758
|| || || || || || || |||||||| || |||| || || | || || |||||
Sbjct 87986 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 88045
Query 157759 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 157818
|| || |||||||| || | || |||| || || || | ||||| ||||| ||
Sbjct 88046 TATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAAT 88105
Query 157819 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 157878
|||||||| ||||| ||||||||||| | || || |||||||||| | || | ||
Sbjct 88106 ATGGGAAGCAGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 88165
Query 157879 ATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACCG 157938
| |||||| | ||||| | | || ||||| ||||||||||||||| | |||
Sbjct 88166 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 88225
Query 157939 TTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGC 157998
| | |||||||| || ||||| ||| |||||||| ||||| || || || || ||||
Sbjct 88226 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCGGTTGCGGCGGCTACTGC 88285
Query 157999 TGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 158058
|| ||| | |||| || |||||||||| ||| || |||| ||||||||| || ||
Sbjct 88286 GGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 88345
Query 158059 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 158118
||||||||||| |||| |||| |||||||||| || || ||||||||||||||||||||
Sbjct 88346 TTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 88405
Query 158119 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 158178
|| || ||| | ||||| ||||| |||||||| || || || || ||||||||| ||
Sbjct 88406 ATTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 88465
Query 158179 AAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTACG 158237
| || |||| || | | || | ||||| || |||| || || || | |
Sbjct 88466 TTCCTTGGTAACTT-CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 88524
Query 158238 GTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCG 158297
|||||| ||||||||||||||||| || ||||| ||||| || || ||||| || || |
Sbjct 88525 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTG 88584
Query 158298 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 158357
|||| || ||||||||||| ||| ||||| || || ||||| || ||||||||| | |
Sbjct 88585 GTCGATTAATCTTCCAATATGCTAGTTTCAATAATTCTCGTTCTTTACACTTCTTCTTAG 88644
Query 158358 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCA 158417
|||| ||||| || || || || ||||| || || | || | ||| ||||| ||||
Sbjct 88645 CTGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCGTTCA 88704
Query 158418 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 158477
|| | || |||||||| |||||||| || | ||||| |||| |||||||| | || |
Sbjct 88705 ACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATA 88764
Query 158478 CCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACG 158537
| ||||| ||| | | ||||| ||| ||||||||||||||||||||||| ||||| |
Sbjct 88765 CTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 88824
Query 158538 CACACAACTTCCCACTCGACCTTGCTGCTGCTGA 158571
| || |||||||| || ||| | ||||||| |||
Sbjct 88825 CTCATAACTTCCCTCTAGACTTAGCTGCTGTTGA 88858
Score = 497 bits (550), Expect = 1e-135
Identities = 726/1021 (71%), Gaps = 4/1021 (0%)
Strand=Plus/Minus
Query 159293 GTTCGACATCCTCGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGG 159352
||| || || | ||||||||| | |||| || || |||||||| || ||||||||
Sbjct 58152 GTTTGATATTATGGATGACTGGTTACGTAGAGACCGTTTCGTTTTTGTAGGTTGGTCTGG 58093
Query 159353 ACTACTACTTCTTCCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTT 159412
||| | || |||| ||||||| | || | || |||||| |||| || || | ||
Sbjct 58092 TCTATTGCTCTTTCCTTGTGCTTATTTCGCTGTAGGGGGTTGGTTTACGGGTACGACGTT 58033
Query 159413 TGTTACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGG-TGCTAACTTTC 159471
||| ||| ||||| ||||| || | || ||||||||| | || || ||| || ||
Sbjct 58032 TGTAACGTCATGGTATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGC-AATTTCT 57974
Query 159472 TCACAGCAGCTGTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGG 159531
| || ||||| || || || |||||| | | | | || ||| | | | || ||||
Sbjct 57973 TAACCGCAGCCGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTGCTGTGGG 57914
Query 159532 GTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAATTTTG 159591
||||||| | || || |||| || ||||| ||| | || || | |||| |||||
Sbjct 57913 GTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTTG 57854
Query 159592 TGGCACTCCACGGTGCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAACTGGCAC 159651
| || || || || || |||| ||||| ||||| ||| | || || || ||||| || |
Sbjct 57853 TTGCTCTTCATGGCGCTTTCGGACTAATAGGTTTTATGTTACGCCAATTCGAACTTGCTC 57794
Query 159652 G-TCTCATTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTT 159710
| ||| | | | || ||||| ||||| || || |||||||| || ||||||||||||
Sbjct 57793 GATCTGTTCAAT-TGCGCCCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTTT 57735
Query 159711 GTCAGCGTCTTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTT 159770
|| || ||||| || || ||| | || ||||| ||||||| || || || |||
Sbjct 57734 GTTTCTGTATTCCTAATTTATCCACTAGGCCAGTCTGGTTGGTTCTTTGCGCCTAGTTTT 57675
Query 159771 GGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTA 159830
|| || ||||| || || ||||| | | || ||||||| ||||| || |||||| |
Sbjct 57674 GGTGTAGCAGCCATATTCCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGCTG 57615
Query 159831 AATCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGTGCCATC 159890
|| || || ||||||||||| ||||||||| || | || | || || || |||| ||
Sbjct 57614 AACCCTTTTCATATGATGGGGGTTGCTGGTGTATTGGGCGCCGCTCTGCTATGTGCTATT 57555
Query 159891 CATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAG 159950
||||| | ||| ||||| || || | | ||||||||| || |||||||| || |
Sbjct 57554 CATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGGGCAAATACATTCCGG 57495
Query 159951 GCGTTTGATTCAACTCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGG 160010
|| ||| | |||| |||| ||||| ||||| || |||||||| || ||||| || |||
Sbjct 57494 GCTTTTAACCCAACCCAAGCTGAGGAAACTTATTCAATGGTCACCGCTAACCGTTTTTGG 57435
Query 160011 TCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATGTTGTTT 160070
|| || ||||| || |||| ||||| || || || ||| | |||||||| ||||| |||
Sbjct 57434 TCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 57375
Query 160071 GTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTTAATCTT 160130
|| || || | ||| | |||| || |||| | | || || || | || ||
Sbjct 57374 GTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACCTA 57315
Query 160131 CGTGCTTACGATTTCGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACC 160190
||||| || || ||||| || || ||| | ||||| |||||||| |||||||||||
Sbjct 57314 CGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCCGAAGATCCTGAATTTGAGACT 57255
Query 160191 TTCTACACCAAAAACATCCTATTGAACGAAGGACTACGTGCATGGTTGGCACCTGCTGAT 160250
|||||||||||||| || || || |||||||| | ||||| ||| |||| || |||
Sbjct 57254 TTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGAT 57195
Query 160251 CAACCCCATGAAAACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAA 160310
|| || ||||||||| |||| ||||| || || || | || | || ||||| ||||||
Sbjct 57194 CAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAA 57135
Query 160311 T 160311
|
Sbjct 57134 T 57134
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 546265077870400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |