Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq1 645 4e-180 seq9259 91.5 2e-13 >seq1 Length=146306 Score = 645 bits (714), Expect = 4e-180 Identities = 741/994 (75%), Gaps = 2/994 (0%) Strand=Plus/Plus Query 150838 CTTTTGTGACTGGGTTACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTGCT 150897 ||| ||| ||||| | ||| || | ||||| || || |||| ||||| ||||| | Sbjct 87866 CTTCTGTAACTGGATAACCAGCACCGAAAACCGCCTTTACATCGGGTGGTTTGGTGTTTT 87925 Query 150898 GATGATTCCAACTCTGTTGGCAGCAACCATTTGCTTCATCGTGGCATTCATCGCTGCTCC 150957 |||||| || || | ||| | ||||| | || || | || ||||| |||||||| Sbjct 87926 GATGATCCCTACATTATTGACTGCAACTTCTGTATTTATTATAGCCTTCATTGCTGCTCC 87985 Query 150958 CCCTGTGGACATCGATGGCATCCGTGAACCCGTTGCTGGTTCTCTGATGTACGGTAACAA 151017 || || || || ||||| || |||||||| ||| |||| ||||| | ||||| ||||| Sbjct 87986 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 88045 Query 151018 CATCATCTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATCGGTCTGCACTTCTATCCCAT 151077 || || |||||||| || ||||| ||||| ||||| || ||||||| ||||| || Sbjct 88046 TATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAAT 88105 Query 151078 CTGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 151137 ||||||||||| ||| | ||||| ||| | ||||| |||||||||| | || |||| Sbjct 88106 ATGGGAAGCAGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 88165 Query 151138 CTTCCACTTCCTGATTGGTATCTATGCTTACATGGGTCGTGAGTGGGAACTGTCTTACCG 151197 | |||||| | ||||| | | ||| |||||||||||||||||||| || ||| Sbjct 88166 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 88225 Query 151198 CTTGGGTATGCGTCCCTGGATCTGC-GTTGCATACTCTGCTCCAGTTGCTGCTGCGAGTG 151256 ||||||||||||| ||||| ||| |||||||| || ||||| ||||| || || | || Sbjct 88226 TCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCGGTTGCGGCGGCTACTG 88284 Query 151257 CAGTGTTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCCCTGGGTA 151316 | || ||| | |||| || |||||||||| ||| ||||||| ||||| || || | Sbjct 88285 CGGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 88344 Query 151317 TTTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCACC 151376 ||||||| || ||||||| |||| |||| ||||| || ||||||||||| || ||||||| Sbjct 88345 TTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 88404 Query 151377 CCTTCCATATGCTTGGTGTGGCTGGTGTCTTCGGTGGATCGCTCTTCTCGGCAATGCACG 151436 | || || ||| | ||||| |||||||| ||||| || || || || || ||||| | Sbjct 88405 CATTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATG 88464 Query 151437 GTTCTCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAACGAGTCCCAGAACTATG 151496 |||| |||| |||||| || | | || ||||| ||||| || || || | | Sbjct 88465 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 88524 Query 151497 GTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCACACGGTTACTTTG 151556 |||||| ||||||||||| ||||| || || || ||||| || || || ||||| |||| Sbjct 88525 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTG 88584 Query 151557 GTCGTCTCATCTTCCAATACGCTTCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCG 151616 |||| | ||||||||||| ||| ||||| ||||| ||||| | ||||||||| | | Sbjct 88585 GTCGATTAATCTTCCAATATGCTAGTTTCAATAATTCTCGTTCTTTACACTTCTTCTTAG 88644 Query 151617 CAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCAGCACCATGGCATTCA 151676 | || ||||| || || ||||| ||||| ||||| | ||| | ||||| ||||| |||| Sbjct 88645 CTGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCGTTCA 88704 Query 151677 ACCTGAACGGTTTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACA 151736 || | || |||||||| |||||||| || | | ||| |||| || || | || | Sbjct 88705 ACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATA 88764 Query 151737 CCTGGGCAGACGTTCTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGTAATG 151796 | ||||| || | | |||||||| || ||||||||||||||||| || ||||||| Sbjct 88765 CTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 88824 Query 151797 CTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 151830 |||| ||||||||||| ||| | ||||||| ||| Sbjct 88825 CTCATAACTTCCCTCTAGACTTAGCTGCTGTTGA 88858 Score = 636 bits (704), Expect = 2e-177 Identities = 757/1018 (74%), Gaps = 8/1018 (1%) Strand=Plus/Minus Query 152358 GTTTGATGTCCTGGATGACTGGCTTAAG-AGAGACCGTTTCGTTTTTGTTGGTTGGTCTG 152416 ||||||| | ||||||||||| ||| | |||||||||||||||||||| |||||||||| Sbjct 58152 GTTTGATATTATGGATGACTGG-TTACGTAGAGACCGTTTCGTTTTTGTAGGTTGGTCTG 58094 Query 152417 GACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTT 152476 | || | || ||||| ||||||| | ||| | || |||||| |||| || || || | Sbjct 58093 GTCTATTGCTCTTTCCTTGTGCTTATTTCGCTGTAGGGGGTTGGTTTACGGGTACGACGT 58034 Query 152477 TCGCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGC-GCAAACTTT 152535 | | ||| |||||||| || |||||||| ||||||||| |||| ||| |||| ||| Sbjct 58033 TTGTAACGTCATGGTATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGCAA--TTT 57976 Query 152536 CTTA-CTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTTCTGCTTCTCTG 152594 |||| | || || ||||||||||| || || | | | || ||| | || | || || Sbjct 57975 CTTAACCGCAGCCGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTGCTGTG 57916 Query 152595 GGGTCCTGAGGCTCAAGGGGATTTCGTCAGATGGATTCAGCTCGGAGGACTCTGGGCTTT 152654 ||||||||| || ||||| ||||| | ||| ||| | || || || ||| |||| Sbjct 57915 GGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTT 57856 Query 152655 TGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGCCAGTTTGAACTGGC 152714 ||| || || || || ||||||| ||||| ||||| ||| | ||||| || ||||| || Sbjct 57855 TGTTGCTCTTCATGGCGCTTTCGGACTAATAGGTTTTATGTTACGCCAATTCGAACTTGC 57796 Query 152715 ACG-TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTT 152773 || ||| || | | || || || ||||| || || |||||||| || || ||||||| Sbjct 57795 TCGATCTGTTCAAT-TGCGCCCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTT 57737 Query 152774 TTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTT 152833 ||||| || || || || || || || || || || ||||||| || || || || Sbjct 57736 TTGTTTCTGTATTCCTAATTTATCCACTAGGCCAGTCTGGTTGGTTCTTTGCGCCTAGTT 57677 Query 152834 TCGGGGTCGCAGCAATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTGGACAT 152893 | || || ||||| || ||||||||| | ||||| ||||||| || || || ||||| Sbjct 57676 TTGGTGTAGCAGCCATATTCCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGC 57617 Query 152894 TGAATCCGTTTCATATGATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCTGCCA 152953 |||| || |||||||||||||| ||||| ||| | ||||| | || |||| | ||| | Sbjct 57616 TGAACCCTTTTCATATGATGGGGGTTGCTGGTGTATTGGGCGCCGCTCTGCTATGTGCTA 57557 Query 152954 TTCATGGTGTTACAGTAGAGAATACTTTGTATCAAGATGGTGAACAAGCAAACACTTTCA 153013 ||||||||| ||| ||||| |||||||| | | |||||||||| ||||| || ||| Sbjct 57556 TTCATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGGGCAAATACATTCC 57497 Query 153014 AAGCTTTCGACAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCT 153073 ||||| || || |||| || || || ||||| ||||| || ||||||||||| | Sbjct 57496 GGGCTTTTAACCCAACCCAAGCTGAGGAAACTTATTCAATGGTCACCGCTAACCGTTTTT 57437 Query 153074 GGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGT 153133 ||||||| || ||||| |||||||| ||||||||| ||| | |||||||||||| | | Sbjct 57436 GGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTAT 57377 Query 153134 TTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATC 153193 ||||||| || | ||| | |||| | || |||| | | ||||| || | || | Sbjct 57376 TTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACC 57317 Query 153194 TTCGTGCTTACGATTTTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAATTTGAGA 153253 | ||||| || || || || || || |||||| | || | ||||||||||||||||||| Sbjct 57316 TACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCCGAAGATCCTGAATTTGAGA 57257 Query 153254 CGTTCTATACGAAGAATATCCTTTTGAACGAAGGTCTTCGTGCTTGGTTGGCACCTGTTG 153313 | ||||| || || ||||| || || ||||||||| ||||||||||| |||| || | Sbjct 57256 CTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAG 57197 Query 153314 ACCAACCTCATGAGAACTTCGTGTTCCCTGAAGAGGTATTGCCACGAGGCAACGCTCT 153371 | || |||||||| ||| | | |||||||| ||||| | || || || |||||||| Sbjct 57196 ATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 57139 >seq9259 Length=9423 Score = 91.5 bits (100), Expect = 2e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 152019 GCTGAGGAACAAGGAGTTGATATGAACTACTCTTGTCGTGCTGGTGCATGTTCCTCTTGT 152078 |||||||| | ||| |||| | ||||| ||||| || || |||| || || ||| Sbjct 3883 GCTGAGGAGGAGGGAATTGACCTACCATACTCGTGTCGGGCGGGGTCATGCTCTTCGTGT 3942 Query 152079 GCTGGTAAGATTGTGAGTGGTACAGTTGATCAGAGTGACCAATCATTCTTGGATGATGAC 152138 ||||||||| | || |||| ||||| ||| ||||| ||| | ||||||||| Sbjct 3943 GCTGGTAAGGTGGTTGCCGGTAGCGTTGACCAGTCAGACCAGAGTTTCCTTGATGATGAC 4002 Query 152139 CAGATTGAATCAGGATTCGTGCTGACCTGTGTTGCATATCCAACTTCTGATGTCACCCTC 152198 ||||||||| | || | || ||||| |||| || || || || ||||||| ||| | Sbjct 4003 CAGATTGAAGCTGGTTGGGTTCTGACTTGTGCCGCTTACCCGTCTGCTGATGTTACCATT 4062 Query 152199 ATGACTGAACAAGAGGAG 152216 |||| | | |||||| Sbjct 4063 GAGACTCACAAGGAGGAG 4080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547508277438400