Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq21835 150 2e-30 seq2381 134 2e-25 seq33024 102 1e-15 >seq21835 Length=5166 Score = 150 bits (166), Expect = 2e-30 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| ||| ||| ||| || || || || |||||||||||||| || | | || Sbjct 3122 GCTTGGCCAATTCTCCGGGCAGGAGGAGACGGACAGCGGTCTGGATCTCCCGAGAGGTGA 3063 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| | |||||| |||| || ||||||| |||||||| | |||| | |||| | Sbjct 3062 TGGTGGACCTCTTGTTGTAGTGGGCGAGACGGCTGGCCTCGGCGGCGATCCTCTCGAAGA 3003 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||||| | |||| ||||||| || |||||||| Sbjct 3002 TGTCGTTCACGAACGAGTTCATGATGGACATGGCCTTGCTGGAGATACCGGTGTCGGGGT 2943 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | || || || ||||| ||||| ||| Sbjct 2942 GGACTTGTTTCAGCACTTTGTAAATG 2917 >seq2381 Length=21385 Score = 134 bits (148), Expect = 2e-25 Identities = 223/316 (71%), Gaps = 7/316 (2%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 || || ||||| ||||| || || ||||| |||||||| || | | | || | | |||| Sbjct 14273 GAATGAATGTTTTCGATAGCAATTTGGAAACCGTAAAATGCACGCGCTTCAGGGAGTTGG 14332 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 | |||||| ||||| ||| || || || ||| || || ||||| ||| || || Sbjct 14333 ATCTCCTTGATGAAGCGGGAAGCGAGATTTTCGAGAACAATACCGTCAGAGGCAGCAAAG 14392 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACAC---CCAGTGG 869809 || || || ||||| |||| ||||||||||| ||| |||| | | ||||| | Sbjct 14393 AAGGCGAGCACGTGAGTGATGAAGTGGCGCTCATCGGGCGTGAGTGTGTCGGACCAGT-G 14451 Query 869810 ACGGTG-TCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTT 869868 ||| | |||| | ||||| || || ||||||||||||| || || ||||| || || Sbjct 14452 TCGGAGATCGGAGGATAGGTCAACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTTTCTT 14511 Query 869869 GTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGTTGGGGTTGT 869927 |||||| ||||| | ||| |||| ||| ||||| | ||| || |||| ||||| | Sbjct 14512 GTACATTTCCCAGATTTGAGGGTATTTGATTGGGAACA-TACAGAACCGGTCCGGGTTTT 14570 Query 869928 CGCGCAACAGGGGTTC 869943 || | |||||||| Sbjct 14571 CGGCGAGGAGGGGTTC 14586 Score = 89.7 bits (98), Expect = 6e-12 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 868700 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 868759 ||||| || || ||| |||||| || || ||||| || | ||||| || ||||||||| Sbjct 13688 TACTCCCCAACCCGCTTCTCGAAGAAATTAGTCTTCCCTTGCAGCGATATTAACTCCATC 13747 Query 868760 CACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGG 868819 || |||||||| | ||||| ||| ||||||| | || | |||| | Sbjct 13748 CAATCAAACGGGTTCGTAACATTGTAAACCTTCCCGCATCCCAACGCACCAAGCAACCTA 13807 Query 868820 TCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACC 868879 || || |||||||| || ||||| | ||| | | ||||||| || | | ||| | Sbjct 13808 TCCGCAACAAACTCAATATACTGACTCATCAACTCCCCGTTCATCCCAACCAACGCACAC 13867 Query 868880 GGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTC 868923 || | || || | |||||||| |||||||||| || ||||| Sbjct 13868 GGTAACGCGTCACAAACAAACTCCCTCTCGATCTCCACCGCCTC 13911 >seq33024 Length=3557 Score = 102 bits (112), Expect = 1e-15 Identities = 192/276 (70%), Gaps = 5/276 (2%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 || ||||| || ||||| ||||| || || |||||||| || ||| | || | | ||| Sbjct 1620 GAATGGATATTTTCGATAGCGATTTGAAACCCGTAAAATGCTCTCGCTTCAGGAAGTTGA 1679 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || ||||||||||| || | || || ||||| ||| || ||||| |||||||| Sbjct 1680 ACTTCCTTCATGAAACGACAAGCGAGATTCTCCAGCACAATACCGTCAGATGCGGCGAAG 1739 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTC-GTCG-CTGAGCGAC-ACCCAGTGG 869809 || || || ||||| |||| || || || || || | || | ||| | | ||||| | Sbjct 1740 AAGGCGAGCACGTGAGTGATGAAATGACGTTCATCGGACGTCAGAGTGTCGGACCAGT-G 1798 Query 869810 ACG-GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTT 869868 ||| |||| | || || || || || ||||||| || || ||||| ||||| Sbjct 1799 ACGTAAATCGGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAAGCTTCGGCTTTTTT 1858 Query 869869 GTACATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904 |||||| ||||| | ||| || | ||| ||||| Sbjct 1859 GTACATTTCCCAGATTTGGGGGAATTTGATTGGGAA 1894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6081886255747240