Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq11074 100 2e-16 seq35076 98.7 8e-16 seq112514 96.9 3e-15 seq36261 91.5 1e-13 seq31228 91.5 1e-13 seq20614 91.5 1e-13 seq12130 89.7 4e-13 seq67502 82.4 6e-11 >seq11074 Length=8391 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 |||||||| ||||| || ||||| |||| |||||||| || ||| | ||| || | Sbjct 478 AAAATGCAGATATTCGTGAAAACCCTAACTGGCAAAACAATAACCCTAGAAGTTGAATCA 537 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || || ||| | | || ||| ||||| |||||||||||| | || ||| Sbjct 538 TCAGACACAATCGACAATGTCAAAACCAAGATCCAAGACAAAGAAGGCATCCCACCTGAT 597 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 |||||| | ||||| | ||| |||||||| || || |||| | || | || |||||| Sbjct 598 CAACAACGTCTTATCTTTGCTGGTAAACAACTTGAAGATGGTCGTACTTTAGCCGATTAC 657 Query 110450 AACATTCAAAAAGAATCTAC 110469 || || || ||||||||||| Sbjct 658 AATATCCAGAAAGAATCTAC 677 >seq35076 Length=3390 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| || | || ||||| |||||||| |||| ||| | Sbjct 2073 ATGCAAATCTTTGTCAAGACCCTTACAGGCAAGACCATTACTCTCGAGGTCGAGAGTTCT 2014 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | | || ||| || ||| ||||| || ||| | || || || Sbjct 2013 GATACAATCGACAATGTTAAAACCAAAATTCAGGACAAGGAGGGCATTCCTCCAGACCAG 1954 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| || || | ||| || || ||||| ||||| | | ||||| | || ||||||||| Sbjct 1953 CAAAGGCTGATCTTTGCAGGCAAGCAGCTTGAGGACGGCCGAACACTCGCTGATTACAAC 1894 Query 110453 ATTCAAAAAGAATCTAC 110469 ||||||||||| || || Sbjct 1893 ATTCAAAAAGAGTCCAC 1877 >seq112514 Length=1387 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 |||||||| ||||| || ||||| ||||| || |||||||||||| | ||| || || Sbjct 615 AAAATGCAGATATTCGTGAAAACCTTAACTGGTAAAACCATTACCTTAGAAGTTGAATCT 556 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 |||||| | | | || ||| |||||| || |||||||| | || ||| Sbjct 555 AGTGATACTATAGATAATGTCAAAACTAAGATTCAAGATAAAGAAGGTATTCCTCCGGAC 496 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 |||||| | | |||| || ||||| ||| |||| |||| | || | || || ||| Sbjct 495 CAACAACGTTTGATTTTCGCCGGTAAGCAGTTGGAAGATGGTCGTACGCTTGCCGACTAC 436 Query 110450 AACATTCAAAAAG 110462 ||||||||||||| Sbjct 435 AACATTCAAAAAG 423 >seq36261 Length=3302 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || ||||| || |||| ||||| |||||||| |||| ||| | | Sbjct 2355 ATGCAAATCTTCGTCAAGACCCTAACTGGCAAGACCATTACTCTCGAGGTTGAGAGTTCC 2414 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || ||| |||||| ||||| || ||| | || || || Sbjct 2415 GACACCATTGACAATGTCAAAACCAAGATTCAGGACAAGGAGGGCATTCCTCCAGACCAG 2474 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||||| || | ||| || || ||||||||||||| | |||| | || ||||| ||| Sbjct 2475 CAAAGACTGATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGAACCCTTGCTGATTATAAC 2534 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || || || || || | || ||||| Sbjct 2535 ATCCAGAAGGAGTCCACCCTCCATTTGGTG 2564 >seq31228 Length=3734 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/127 (76%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 110349 TAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATG 110408 |||||| |||||| || || |||||| | || |||||| ||||| ||||| | || Sbjct 3698 TAAAACT-AAGATTCAGGATAAGGAAGGCATCCCACCGGATCAGCAAAGGCTTATCTTTG 3640 Query 110409 CGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTA 110468 | ||||| ||||||||||||| | | || |||| ||||| |||||||| || || |||| Sbjct 3639 CCGGTAAGCAGCTGGAGGATGGCCGCACTTTGGCCGATTATAACATTCAGAAGGAGTCTA 3580 Query 110469 CGTTGCA 110475 | |||| Sbjct 3579 CCCTGCA 3573 >seq20614 Length=5371 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||||||||||||||| || | |||||||| |||||||| |||| ||| | Sbjct 2091 ATGCAAATATTTGTCAAGACCCTTACCGGCAAGACCATTACTCTCGAGGTCGAGAGTTCA 2150 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || || |||||| ||||| || ||| | || ||||| Sbjct 2151 GACACCATTGACAATGTCAAGACTAAGATTCAGGACAAGGAGGGCATTCCTCCAGATCAG 2210 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||||| || | ||| || || ||||| || |||| | | || | || ||||| ||| Sbjct 2211 CAGAGACTGATCTTTGCAGGAAAGCAGCTTGAAGATGGCCGCACTCTTGCAGATTATAAC 2270 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || ||||| || |||||| | ||| | ||| Sbjct 2271 ATCCAAAAGGAGTCTACGCTTCACCTTGTG 2300 >seq12130 Length=7920 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||| || || || ||||| ||||| ||| | || |||| | Sbjct 5521 ATGCAGATCTTTGTCAAGACATTGACTGGCAAGACCATCACCTTAGAGGTGGAGAGCAGC 5462 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| ||| | || || |||||| || || ||||| | || ||||| Sbjct 5461 GACACTATCGATAATGTCAAGACGAAGATCCAGGATAAGGAAGGAATCCCACCAGATCAG 5402 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || | |||| ||| || |||||| ||||||||| | || ||||||||||||| Sbjct 5401 CAGAGGTTGATTTTTGCTGGGAAACAGTTGGAGGATGGGCGCACTTTGGCGGATTACAAT 5342 Query 110453 ATTCAAAAAGAATCTAC 110469 ||||| || |||||||| Sbjct 5341 ATTCAGAAGGAATCTAC 5325 >seq67502 Length=1962 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || ||||| || |||| ||||| |||||||| |||| ||| | Sbjct 1594 ATGCAAATCTTCGTCAAGACCCTAACTGGCAAGACCATTACTCTCGAGGTTGAGAGTTCT 1653 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || ||| |||||| ||||| || ||| | || ||||| Sbjct 1654 GACACCATTGACAATGTCAAAACCAAGATTCAGGACAAGGAGGGCATTCCTCCAGATCAG 1713 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| || || | ||| || || ||||||||||||| | | || | || ||||| ||| Sbjct 1714 CAAAGGCTGATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGCACCCTTGCTGATTATAAC 1773 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || || || || || | || ||||| Sbjct 1774 ATCCAGAAGGAGTCCACCCTCCATTTGGTG 1803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 411293304665960