Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq21835 149 1e-29 seq2381 111 2e-18 >seq21835 Length=5166 Score = 149 bits (164), Expect = 1e-29 Identities = 160/210 (76%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 1485505 GCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTG 1485564 |||||| |||||| ||| ||| ||| || || || || |||||||||||||| || | | Sbjct 3126 GCGTGCTTGGCCAATTCTCCGGGCAGGAGGAGACGGACAGCGGTCTGGATCTCCCGAGAG 3067 Query 1485565 CCGATCGTGTTGCGCTTGTT--AGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGT 1485622 ||| ||| | |||||| |||| ||| || |||| |||||||| | |||| | | Sbjct 3066 GTGATGGTGGACCTCTTGTTGTAGTGGGCG--AGACGGCTGGCCTCGGCGGCGATCCTCT 3009 Query 1485623 CGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGT 1485682 ||| |||||||| || |||||||||||||| ||||| | ||| ||||||| || || Sbjct 3008 CGAAGATGTCGTTCACGAACGAGTTCATGATGGACATGGCCTTGCTGGAGATACCGGTGT 2949 Query 1485683 CGGGGTGCACCTGCTTGAGCACCTTGTAAA 1485712 ||||||| || || || ||||| ||||||| Sbjct 2948 CGGGGTGGACTTGTTTCAGCACTTTGTAAA 2919 >seq2381 Length=21385 Score = 111 bits (122), Expect = 2e-18 Identities = 180/256 (70%), Gaps = 5/256 (2%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 || || || | ||||| |||||| ||||||||| || || || || || || ||| Sbjct 14318 GCTTCAGGGAGTTGGATCTCCTTGATGAAGCGGGAAGCGAGATTTTCGAGAACAATACCG 14377 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || ||| || || |||||||| ||||| |||| ||||| ||||| ||| |||| Sbjct 14378 TCAGAGGCAGCAAAGAAGGCGAGCACGTGAGTGATGAAGTGGCGCTCATCGGGCGTGAGT 14437 Query 796270 GAGAC---CCAGTGGACCGTG-TCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGA 796325 | | | |||||| | | | |||| | ||||| || || ||||||||||| ||||| Sbjct 14438 GTGTCGGACCAGTGT-CGGAGATCGGAGGATAGGTCAACTTCTTCGGCGGTCCAGAAGGA 14496 Query 796326 GGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAA 796385 || ||||| || |||||||| ||||| || | |||| ||| ||||||| | || Sbjct 14497 TGCTTCGGCTTTCTTGTACATTTCCCAGATTTGAGGGTATTTGATTGGGAACATACAGAA 14556 Query 796386 GCGATTGGGGTTCTCG 796401 || | ||||| ||| Sbjct 14557 CCGGTCCGGGTTTTCG 14572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7883512820089080