Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq11074 132 8e-26 seq18381 96.9 5e-15 seq3724 86.0 1e-11 >seq11074 Length=8391 Score = 132 bits (146), Expect = 8e-26 Identities = 160/215 (74%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| |||||| | ||||| |||| || |||||||| || | || || ||| ||| | Sbjct 482 TGCAGATATTCGTGAAAACCCTAACTGGCAAAACAATAACCCTAGAAGTTGAATCATCA- 540 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || || | ||||| |||| || || ||| ||||||||||| ||||| |||||| Sbjct 541 GACACAATCGACAATGTCAAAACCAAGATCCAAGACAAAGAAGGCATCCCACCTGATCAA 600 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||| | || || ||||| ||||||||| | || ||| | | || ||| | ||||| ||| Sbjct 601 CAACGTCTTATCTTTGCTGGTAAACAACTTGAAGATGGTCGTACTTTAGCCGATTACAAT 660 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 || || |||||||| ||| | ||| | || ||||| Sbjct 661 ATCCAGAAAGAATCTACTCTTCATCTTGTTTTACG 695 >seq18381 Length=6025 Score = 96.9 bits (106), Expect = 5e-15 Identities = 157/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || |||| || || || |||||| | || || || | || Sbjct 2299 TGCAAATCTTCGTCAAGACCCTAACTGGCAAGACCATTACTCTCGAGGTTGAGAGTTCCG 2240 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||| |||| || || || || ||||||||||| || || || | Sbjct 2239 ACACCATTGACAATGTCAAAACCAAGATTCAGGACAAGGAAGGCATTCCTCCAGACCAGC 2180 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| || || ||||| || || ||| | || ||| |||| | | ||||| |||| Sbjct 2179 AAAGGCTGATCTTTGCTGGGAAGCAACTTGAGGATGGCCGAACCCTTGCTGATTACAATA 2120 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||| || || || ||||||| || | || | |||||||| Sbjct 2119 TTCAAAAGGAGTCCACCCTCCATTTGGTGCTCCGTCTCAGAGGAGG 2074 >seq3724 Length=15214 Score = 86.0 bits (94), Expect = 1e-11 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| |||||| | ||||| ||||| || || ||||| || || || || |||| | Sbjct 4474 TGCAGATATTCGTGAAAACCTTAACCGGCAAGACAATAACCATGGAAGTCGAACCGTCTG 4415 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | | || | || | || ||||| || ||||||||||| ||||| || || | Sbjct 4414 ACTCGATCAACAACATTAAGTCCAAAATCCAGGACAAAGAAGGCATCCCACCTGACCAGC 4355 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | || || |||||||| || ||| | || ||| | || || || |||| || |||| Sbjct 4354 AACGTCTTATATTTGCAGGCAAGCAACTTGAAGATGACAGGACCGTAGCAGACTACAATA 4295 Query 146212 TACAAAAAGAATCGACTATCCA 146233 | || || || || ||| |||| Sbjct 4294 TCCAGAAGGAGTCCACTCTCCA 4273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 783142410942400