Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq1 547 8e-151 seq9259 120 4e-22 >seq1 Length=146306 Score = 547 bits (606), Expect = 8e-151 Identities = 723/994 (73%), Gaps = 8/994 (1%) Strand=Plus/Plus Query 177558 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177617 ||||| | ||| |||| ||| | |||||||| || |||| ||||| || || || Sbjct 87867 TTCTGTAACTGGATAACCAGCACCGAAAACCGCCTTTACATCGGGTGGTTTGGTGTTTTG 87926 Query 177618 ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCGTCGCTGCTCC 177676 ||||| || || | ||| | |||||| |||| || || | |||||| | |||||||| Sbjct 87927 ATGATCCCTACATTATTGACTGCAACT-TCTGTATTTATTATAGCCTTCATTGCTGCTCC 87985 Query 177677 CCCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 177736 || || || || || || || |||||||| || |||| || || | || || ||||| Sbjct 87986 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 88045 Query 177737 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 177796 || || |||||||| || | || |||| || || || | ||||| ||||| || Sbjct 88046 TATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAAT 88105 Query 177797 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 177856 |||||||| ||||| ||||||||||| | || || |||||||||| | || | || Sbjct 88106 ATGGGAAGCAGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 88165 Query 177857 CTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAACTTTCATACCG 177916 | |||||| | | || | | |||||||| ||||||||||||||| | ||| Sbjct 88166 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 88225 Query 177917 TCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCACCTGTTGCAGCAGCATCCGC 177976 ||| |||||||| || ||||| ||||||||| || || || ||||| || || | || Sbjct 88226 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCGGTTGCGGCGGCTACTGC 88285 Query 177977 AGTCTTTCTAG-TCTATCCTTTCGGTCAAGGTTCATTCTCCGATGCTATGCCTCTTGGTA 178035 || ||||| | |||| || |||||||||| || || |||| ||||||||| || | Sbjct 88286 GGT-TTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 88344 Query 178036 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCACC 178095 | ||||||||||| |||| |||| |||||||||| || || ||||| ||||||||||||| Sbjct 88345 TTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 88404 Query 178096 CGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATG 178155 | || |||||| | ||||| ||||| |||||||| || || || || ||||||||||| Sbjct 88405 CATTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATG 88464 Query 178156 GAAGTCTCGTTACTTCTTCGCTCGTCCGTGAGACGACAGAAACTGAGTCCCAGAACTATG 178215 | | || |||||| | || | || || ||||||| ||| || || | | Sbjct 88465 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 88524 Query 178216 GTTACAAGTTCGGACAAGAAGAAGAAACATATAACATCGTCGCAGCCCATGGTTACTTCG 178275 |||||| ||||| ||||| |||||||| ||||| ||||| || || |||||||| || | Sbjct 88525 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTG 88584 Query 178276 GTCGTTTGATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTGCACTTCTTCCTCG 178335 |||| || |||||||||||||| ||||| || || ||||| | ||||||||| | | Sbjct 88585 GTCGATTAATCTTCCAATATGCTAGTTTCAATAATTCTCGTTCTTTACACTTCTTCTTAG 88644 Query 178336 CAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTTGGTGTATCCACCATGGCATTTA 178395 | || ||||| ||||| || || ||||| || || | ||| | ||| ||||| || | Sbjct 88645 CTGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCGTTCA 88704 Query 178396 ACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACA 178455 || | ||||| ||||| |||||||| || | | || | ||||| ||||| | || | Sbjct 88705 ACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATA 88764 Query 178456 CATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAAAGAAATA 178515 | ||||| || | | |||||||| || || |||||||| ||||| ||| | ||| Sbjct 88765 CTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT- 88823 Query 178516 GCACATAACTTCCCGCTTGATCTTGCAGCAGCTG 178549 || ||||||||||| || || ||| ||| |||| Sbjct 88824 GCTCATAACTTCCCTCTAGA-CTT--AGCTGCTG 88854 Score = 527 bits (584), Expect = 8e-145 Identities = 731/1017 (72%), Gaps = 6/1017 (1%) Strand=Plus/Minus Query 178938 GTTCGATGTCTTGGATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCTGG 178997 ||| ||| | ||||||||||| | | | || || || || ||||| ||||||||||| Sbjct 58152 GTTTGATATTATGGATGACTGGTTACGTAGAGACCGTTTCGTTTTTGTAGGTTGGTCTGG 58093 Query 178998 ACTCCTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTT 179057 || | || |||| ||||||| | || | || |||||| |||| || || | || Sbjct 58092 TCTATTGCTCTTTCCTTGTGCTTATTTCGCTGTAGGGGGTTGGTTTACGGGTACGACGTT 58033 Query 179058 TGTTACGAGTTGGTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGG-TGCTAACTTTC 179116 ||| ||| ||||| |||||||| | || ||||||||| | ||||| ||| | |||| Sbjct 58032 TGTAACGTCATGGTATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGCAA--TTTC 57975 Query 179117 TTA-CGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGG 179175 ||| | ||||| || || || |||||| || | | | || ||| | | | || ||| Sbjct 57974 TTAACCGCAGCCGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTGCTGTGG 57915 Query 179176 GGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTC 179235 |||||||| | || || |||| || ||||| ||| | || || || |||| ||| Sbjct 57914 GGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTT 57855 Query 179236 GTGGCTCTCCACGGTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCA 179295 || ||||| || || || |||| ||||| || || ||| | || || || ||||| || Sbjct 57854 GTTGCTCTTCATGGCGCTTTCGGACTAATAGGTTTTATGTTACGCCAATTCGAACTTGCT 57795 Query 179296 CG-TCTCATCGGTATCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATT 179354 || ||| || | | || ||||| ||||| || || || |||| || ||||| || || Sbjct 57794 CGATCTGTTCAAT-TGCGCCCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTT 57736 Query 179355 CGTTAGTGTATTTCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTT 179414 ||| |||||| || || || ||||| || || || |||||||||||||||| || Sbjct 57735 TGTTTCTGTATTCCTAATTTATCCACTAGGCCAGTCTGGTTGGTTCTTTGCGCCTAGTTT 57676 Query 179415 TGGTGTTGCGGCGATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACT 179474 |||||| || || || || ||||| | || || || ||||| || || || ||||| || Sbjct 57675 TGGTGTAGCAGCCATATTCCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGCT 57616 Query 179475 CAACCCCTTTCACATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTAT 179534 ||||| ||||| |||||||| ||||| ||| | |||| | |||||||| | |||||| Sbjct 57615 GAACCCTTTTCATATGATGGGGGTTGCTGGTGTATTGGGCGCCGCTCTGCTATGTGCTAT 57556 Query 179535 TCATGGAGTAACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTTAA 179594 |||||| | || ||||| ||||| || | ||||||||| || ||||| ||||| Sbjct 57555 TCATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGGGCAAATACATTCCG 57496 Query 179595 AGCGTTCGACTCTACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTG 179654 || || || | || |||| ||||| || ||||| ||||| || || ||||||||||| Sbjct 57495 GGCTTTTAACCCAACCCAAGCTGAGGAAACTTATTCAATGGTCACCGCTAACCGTTTTTG 57436 Query 179655 GTCGCAGATCTTCGGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTT 179714 ||| || ||||| |||||| | ||| |||||| |||||||| || ||||||| | | || Sbjct 57435 GTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATT 57376 Query 179715 TGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCTCTTAATCT 179774 ||| || || | ||| | ||| | | || |||| | | || || || | || || Sbjct 57375 TGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACCT 57316 Query 179775 TCGTGCTTATGATTTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGAC 179834 ||||| ||||| || || || || ||| | ||||| ||||||||||| || ||||| Sbjct 57315 ACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCCGAAGATCCTGAATTTGAGAC 57256 Query 179835 GTTCTATACAAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGA 179894 ||||| || || || ||||| | || ||||| | ||||||||| |||| || || Sbjct 57255 TTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGA 57196 Query 179895 TCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTCCTACCTAGTGGTAACGCACT 179951 ||| || ||||||||| | || ||||| || || || ||||| |||| ||||| || Sbjct 57195 TCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 57139 >seq9259 Length=9423 Score = 120 bits (132), Expect = 4e-22 Identities = 167/233 (72%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 138529 GATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGT 138588 ||||| |||| | ||||| ||||| || | || ||||| || || ||||| ||| Sbjct 3859 GATGACGTGTACGTGCTTGACCAGGCTGAGGAGGAGGGAATTGACCTACCATACTCGTGT 3918 Query 138589 CGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCT 138648 || || || |||| ||| | ||||||||||| | |||| || | || || ||||| Sbjct 3919 CGGGCGGGGTCATGCTCTTCGTGTGCTGGTAAGGTGGTTGCCGGTAGCGTTGACCAGTCA 3978 Query 138649 GACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAGCA 138708 |||||| |||||||||||||||||| |||| ||| || | | ||||||| | || Sbjct 3979 GACCAGAGTTTCCTTGATGATGACCAGATTGAAGCTGGTTGGGTTCTGACTTGTGCCGCT 4038 Query 138709 TACCCCACATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACTATACTG 138761 ||||| | | ||| || ||||| ||| | || ||||| ||||| ||||| Sbjct 4039 TACCCGTCTGCTGATGTTACCATTGAGACTCACAAGGAGGAGGAACT-TACTG 4090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603337501115200