Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2381 96.9 8e-15 seq80314 93.3 1e-13 seq33024 87.8 4e-12 seq100015 84.2 5e-11 seq6018 84.2 5e-11 >seq2381 Length=21385 Score = 96.9 bits (106), Expect = 8e-15 Identities = 277/419 (66%), Gaps = 18/419 (4%) Strand=Plus/Minus Query 131867 GCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTT 131926 || ||||||||||||||||| |||||||| || || ||||| ||||| || ||||| Sbjct 14115 GCATTTGCTTGTGTTGAAGGGATATTCTTCTCTGGAAGCTTCTGCGCTATATTCTGGCTG 14056 Query 131927 AAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAA 131986 || |||||||| || ||||||||||| | || || || | || || || |||| ||| Sbjct 14055 AAAAAGCGTGGTTTAATGCCTGGACTAACCTTCTCTAACGAGTTAATTTCTCGAGACGAA 13996 Query 131987 G-----CATTGC-ATACTGAA--TTTGCTATATTAATCTATAGAAAATTTGCTGATAAAC 132038 | |||||| || | | |||| |||| | ||||| ||| | | || | | Sbjct 13995 GGGCTTCATTGCGATTTCGCATGTTTGTTATACT-CTCTATTGAAGA--AGAAGACGAGC 13939 Query 132039 TTGATGAAAAT-AATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTT 132097 | || | | || | | | || || | || || || || ||||||| ||||||| Sbjct 13938 GAGGAGAGAGTCAAAAGT--ATAATTTCT----GAGGCGGTGGAGATCGAGAGGGAGTTT 13885 Query 132098 ATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCTATGAAGGAGTAC 132157 || || || || || || ||| |||||||||| | || | |||| |||| Sbjct 13884 GTTTGTGACGCGTTACCGTGTGCGTTGGTTGGGATGAACGGGGAGTTGATGAGTCAGTAT 13825 Query 132158 ATTGAATTCGTTGCTGATCGTTTAATTAACCAACTTGGATATTCCAAGATTTATAACACC 132217 ||||| || ||||| ||| | || || | |||| ||| |||| || Sbjct 13824 ATTGAGTTTGTTGCGGATAGGTTGCTTGGTGCGTTGGGATGCGGGAAGGTTTACAATGTT 13765 Query 132218 CAAAACCCCTATACATGGATGGAGTCAATTTCGCTTGAAGGTAAAACGAACTTCTTCGA 132276 ||||| | | |||||||||| ||| ||||| |||| || || || |||||||| Sbjct 13764 ACGAACCCGTTTGATTGGATGGAGTTAATATCGCTGCAAGGGAAGACTAATTTCTTCGA 13706 >seq80314 Length=1716 Score = 93.3 bits (102), Expect = 1e-13 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 131867 GCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTT 131926 || ||||||||||||||||| ||||||| || || ||| |||||||| || ||||| Sbjct 828 GCATTTGCTTGTGTTGAAGGAGTATTCTTCTCTGGAAGTTTATGTGCTATATTCTGGCTG 887 Query 131927 AAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAA 131986 || ||||| || || ||||||||||| | || || ||| | || || || |||| ||| Sbjct 888 AAAAAGCGAGGTTTAATGCCTGGACTAACCTTCTCTAATGAGTTAATTTCTCGAGACGAA 947 Query 131987 G 131987 | Sbjct 948 G 948 >seq33024 Length=3557 Score = 87.8 bits (96), Expect = 4e-12 Identities = 268/409 (66%), Gaps = 9/409 (2%) Strand=Plus/Minus Query 131576 GTTCTTGCATTCTTCGCCGGAAGTGATGGCATTGTTATTGAAAATCTTGTTATTAATTTC 131635 || || || |||||||||| | ||| || ||||| | || ||||| | | | |||| Sbjct 1750 GTGCTCGCCTTCTTCGCCGCATCTGACGGTATTGTGCTGGAGAATCTCGCTTGTCGTTTC 1691 Query 131636 ATTCAAGAAATTGATATTCCTGAAGTAACATCGTTCTACACATTTCAAGCCGCTGTTGAA 131695 || | ||| || | ||||||||| | | | || ||| |||||| |||| | ||| Sbjct 1690 ATGAAGGAAGTTCAACTTCCTGAAGCGAGAGCATTTTACGGGTTTCAAATCGCTATCGAA 1631 Query 131696 TCTATTCATAGCGAGATGTATTCATTATTGATTGAGAGTCTTG--TTAAAAATGAAGATG 131753 ||| ||| ||| ||||| || ||||| |||| ||| ||| |||| || || | Sbjct 1630 AATATCCATTCCGAAATGTACTCCTTATT-ATTG-GAGACTTACATTAAGGATTCGGAGG 1573 Query 131754 ATAAAAATAAATTATTTGATGCTGTAAATAAATTTCCTGCAATTAAAAAGAAAGCAGAAT 131813 | ||| ||||| |||||| | | | || || | || || || || | Sbjct 1572 AAAAATCGGGTTTATTCCGTGCTGTTGAGACTATCCCCGCTGTCAAGCGCAAGGCTGATT 1513 Query 131814 GGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAGACTTGTAGCTTTTG 131873 |||| | ||||| | | | | | ||| || || |||| ||||| | Sbjct 1512 GGGCCTTGCGCTGGATCGACGGCGGG---GAGAGTTTCGCTGAGCGAATTGTCGCTTTCG 1456 Query 131874 CTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTTAAGAAGC 131933 ||||||||||||| |||||||| || || ||||| || || |||||||| ||||| | Sbjct 1455 CTTGTGTTGAAGGGATATTCTTCTCTGGAAGCTTCTGCGCGATATTTTGGCTCAAGAAAC 1396 Query 131934 GTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCA--TCTCGAGA 131980 | ||||| ||||| || || | || || || | || | |||||||| Sbjct 1395 GAGGATTAATGCCGGGGCTTACCTTCTCGAACGAGTTGATTTCTCGAGA 1347 >seq100015 Length=1511 Score = 84.2 bits (92), Expect = 5e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 131859 GACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCT 131918 || |||| ||||| |||||||||||||| |||||||| || || ||||| || || | Sbjct 1378 GAATTGTCGCTTTCGCTTGTGTTGAAGGGATATTCTTCTCTGGAAGCTTCTGCGCGATAT 1319 Query 131919 TTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGA 131978 ||||||| ||||| || || || ||||| || || | || || || | || || || Sbjct 1318 TTTGGCTCAAGAAACGAGGGTTAATGCCAGGGCTTACCTTCTCGAACGAGTTGATTTCTC 1259 Query 131979 GAGATGAAGCATTGCA 131994 |||| || | ||| || Sbjct 1258 GAGACGAGGGATTACA 1243 >seq6018 Length=12126 Score = 84.2 bits (92), Expect = 5e-11 Identities = 134/186 (72%), Gaps = 10/186 (5%) Strand=Plus/Plus Query 305307 GACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGT 305366 |||||||||||||| ||| | || || ||||| |||| || || |||||||||| Sbjct 5829 GACATTTGAATGACGGTGACTTTGTGCTTTTCAACCGGCAGCCCAGTCTCCATAAAATGT 5888 Query 305367 CTATGATGGCTCATAAAGTCAAAGTATTAT--CTGGATTGACATTTCGATTAAAT--GTA 305422 | || |||| ||| | |||| ||||| || | ||||| || || ||| || Sbjct 5889 CAATTATGGGGCATCGTAT-AAAG-ATTATGCCTTATTCCACATTCCGTTTGAATTTGTC 5946 Query 305423 AGTG-CTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACC 305481 ||| | | | || || ||||| ||||||||||| ||||||||||| |||||||| || Sbjct 5947 TGTGACCT---CACCATACAATGCTGATTTTGATGGCGATGAAATGAACATGCATGTTCC 6003 Query 305482 TCAATC 305487 ||||| Sbjct 6004 CCAATC 6009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1182133597678920