Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq1 565 7e-157 >seq1 Length=146306 Score = 565 bits (626), Expect = 7e-157 Identities = 718/978 (73%), Gaps = 10/978 (1%) Strand=Plus/Plus Query 19510 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 19569 ||||||| | || ||| | ||||| ||||| | ||||||||||| ||||||| Sbjct 87872 TAACTGGATAACCAGCACCGAAAACCGCCTTTACATCGGGTGGTTTGGTGTTTTGATGAT 87931 Query 19570 TCCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAG 19628 || | | ||| || | |||| || ||||| || |||||||| ||||| |||| Sbjct 87932 CCC-TACATTATTGACTGCAACTTCTGTATTTATTATAGCCTTCATTGCTGCTCCTCCAG 87990 Query 19629 TTGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCA 19688 | || |||||||| || || ||||| || || || || ||||| |||||||| || | Sbjct 87991 TAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTA 88050 Query 19689 TATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTG 19746 | || || ||| | |||| | | ||| || || || | ||||| || ||||| || Sbjct 88051 TTTCTGGTGCCATTATTCCTACTTCTGCA--GCTATAGGGTTGCACTTTTATCCAATATG 88108 Query 19747 GGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTT 19806 |||||| || ||||||| ||| | ||||| || || || | | || | || | Sbjct 88109 GGAAGCAGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCT 88168 Query 19807 CCACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACT 19866 |||||| | |||| | | ||| ||||| || |||||||||||||| | || || Sbjct 88169 ACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCT 88228 Query 19867 AGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGT 19926 || ||| | ||||||||| |||||| || || ||||||||||| || || ||||||| Sbjct 88229 GGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCGGTTGCGGCGGCTACTGCGGT 88288 Query 19927 CTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCT 19985 ||||| | ||||||| | ||||| || || || || |||| ||||||| | || || | Sbjct 88289 -TTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTT 88347 Query 19986 CGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGT 20045 | ||||| ||||||| |||| | |||||||| || || || ||||| || |||||||| | Sbjct 88348 CTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCAT 88407 Query 20046 TCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTT 20105 | |||||| | ||||| |||||||||||||| || || ||||| ||||| ||||| |||| Sbjct 88408 TTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTT 88467 Query 20106 CGCTTGTTACGTCCTCGCTTGTGC-GTGAGACTACTGAACAGGAAAGTCAGAACTATGGT 20164 | |||| || | || | ||| | | || || || ||| | ||| | || | ||| Sbjct 88468 C-CTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 88526 Query 20165 TACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGA 20224 |||| || || ||||| ||||| || ||||| |||||||| ||||||||||| ||||| Sbjct 88527 TACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGT 88586 Query 20225 CGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCT 20284 || || ||||||||||| ||| |||||| ||| |||||| ||||||||||| | ||| Sbjct 88587 CGATTAATCTTCCAATATGCTAGTTTCAATAATTCTCGTTCTTTACACTTCTTCTTAGCT 88646 Query 20285 GCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAAT 20344 || |||||||| ||||| |||||||| |||| || || || || |||||||| || Sbjct 88647 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCGTTCAAC 88706 Query 20345 CTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACT 20404 | || |||||||| || ||||| || | | || | | |||||||| ||| ||||| Sbjct 88707 TTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACT 88766 Query 20405 TGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCT 20464 |||||||| || | || |||||||| || || | || || ||||||||||| |||||| Sbjct 88767 TGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 88826 Query 20465 CATAACTTCCCACTTGAC 20482 ||||||||||| || ||| Sbjct 88827 CATAACTTCCCTCTAGAC 88844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148284953519760