Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq59535 102 8e-17 seq112514 100 3e-16 seq279023 93.3 4e-14 seq9218 93.3 4e-14 seq60406 91.5 1e-13 seq35076 89.7 5e-13 seq12130 89.7 5e-13 seq278817 86.0 6e-12 seq11074 86.0 6e-12 >seq59535 Length=2228 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || || |||||||||||| | |||||| ||||||||| ||||| |||| Sbjct 1558 GATTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCATCTTCGAGTTGTTTTCCGGCG 1617 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||||||||| ||||| ||||| || || |||||||| || ||||| ||| | Sbjct 1618 AAGATTAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGGATTTTGGTTTTGACA 1677 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| | || || |||| || | ||||| || || || |||||| Sbjct 1678 TTGTCGATTGTGTCGGAGGATTCAACCTCGAGGGTGATTGTTTTGCCGGTTAGGGTTTTT 1737 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 1738 ACGAAGATCTGCAT 1751 >seq112514 Length=1387 Score = 100 bits (110), Expect = 3e-16 Identities = 140/195 (72%), Gaps = 1/195 (1%) Strand=Plus/Plus Query 131929 TGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGA 131988 |||| |||||||||||||||||||| | ||||| |||||| | ||| ||||||| Sbjct 419 TGAC-CTTTTTGAATGTTGTAGTCGGCAAGCGTACGACCATCTTCCAACTGCTTACCGGC 477 Query 131989 ATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAA 132048 | || | ||| ||||| || ||||| || ||||||||||| ||| || ||| | Sbjct 478 GAAAATCAAACGTTGTTGGTCCGGAGGAATACCTTCTTTATCTTGAATCTTAGTTTTGAC 537 Query 132049 CTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 132108 | || | |||||| | | || ||||| | || | ||||||||||| | ||||| Sbjct 538 ATTATCTATAGTATCACTAGATTCAACTTCTAAGGTAATGGTTTTACCAGTTAAGGTTTT 597 Query 132109 TATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 598 CACGAATATCTGCAT 612 >seq279023 Length=610 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | ||||||| || |||||||| ||||| || ||||||| ||| || Sbjct 151 ACCAAATGAAGGGTTGACTCCTTCTGAATGTTATAGTCAGCCAGGGTACGCCCATCCTCC 92 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | ||| || || | | |||| || | ||| ||||||||||| |||||||| || || | Sbjct 91 AACTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTGA 32 Query 132035 ATTTTT 132040 |||||| Sbjct 31 ATTTTT 26 >seq9218 Length=18002 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATCTTC 131973 |||||||| | | ||||| || ||||| ||||| || ||| | ||||||| ||||| Sbjct 14677 ACCAAATGGAGAGTCGACTCCTTCTGAATATTGTAATCAGCT-AGGGTACGCCCGTCTTC 14735 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 | ||||| |||| | |||| | | ||| ||||||||||| || ||||||||||| Sbjct 14736 CAATTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAGGAATCCCTTCTTTATCCTG 14795 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 || ||| |||| | || | || || | || ||||| | || | ||||| Sbjct 14796 GATCTTTGTCTTCACATTGTCAATGGTGTCCGAGCTTTCGACTTCCAGGGTAATAGTTTT 14855 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||| || | |||||||||||| Sbjct 14856 CCCAGTTAGAGTCTTGACGAAAATCTGCAT 14885 >seq60406 Length=2202 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | | ||||| || || ||||| || || || ||||| || || Sbjct 1120 ACCAAATGGAGGGTCGACTCCTTCTGGATGTTATAATCAGCCAAAGTACGGCCGTCCTCA 1179 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| ||||| | | |||| || | ||| |||||||| || || ||||| ||||| | Sbjct 1180 AGCTGCTTACCAGCAAAGATAAGCCTCTGCTGATCTGGGGGGATACCTTCCTTATCCTGA 1239 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| ||| | | || | |||||| | ||| || |||| || | || || Sbjct 1240 ATTTTAGTTTTGACATTGTCAATAGTATCAGAGCTCTCAACCTCGAGGGTAATGGTCTTT 1299 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 ||||||| ||||| | |||||||||||| || Sbjct 1300 CCAGTCAAGGTTTTCACAAAAATCTGCATGCCT 1332 >seq35076 Length=3390 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | | |||||||| || ||||||||||| || |||||| ||| || Sbjct 1409 ACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCCAGGGTACGGCCATCCTCA 1468 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 || || || |||| | |||| || | || || || ||||| || ||||| ||||| | Sbjct 1469 AGTTGCTTTCCGGCAAAGATCAGCCTTTGCTGGTCCGGAGGAATACCTTCCTTATCCTGA 1528 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || ||| | | || | || || | ||| ||||| | || | ||||| Sbjct 1529 ATCTTGGTTTTGACATTATCAATGGTGTCTGAGCTCTCAACTTCAAGGGTGATGGTTTTC 1588 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || ||||| ||||| | ||||||||||| Sbjct 1589 CCGGTCAGCGTTTTGACAAAAATCTGCAT 1617 >seq12130 Length=7920 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | ||||| ||||| |||||||||||| | ||| || |||||| Sbjct 1211 ACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGCGAGGGTTCGGCCATCTTCA 1270 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 || |||||||| | | |||| | ||| || || ||||| || || || ||||| || | Sbjct 1271 AGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGGGGAATTCCCTCTTTGTCTTGA 1330 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || ||| ||| | | || | || |||| ||| || |||| || | || ||| Sbjct 1331 ATCTTTGTTTTGACATTATCGATTGTGTCGGAGCTCTCAACCTCGAGAGTGATGGTCTTA 1390 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || |||| ||| || | ||| || ||||| Sbjct 1391 CCGGTCAAAGTCTTAACGAAGATTTGCAT 1419 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | ||||||| || || |||||||| || | ||| || Sbjct 5535 CGCAACACCAAATGGAGTGTTGACTCCTTCTGGATGTTGTAATCAGCGAGGGTGCGGCCG 5594 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || |||||||| || |||| | | || || | ||| || ||||| || || || || ||| Sbjct 5595 TCCTCGAGCTGCTTTCCGGCAAAAATAAGCCTCTGCTGGTCTGGGGGAATTCCCTCCTTA 5654 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || || | | || | ||||||| |||||| |||| || | Sbjct 5655 TCCTGGATCTTGGTCTTGACATTGTCAATGGTATCGGAACTCTCCACCTCGAGGGTAATA 5714 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || ||||||| ||| || | |||||||||||| Sbjct 5715 GTCTTTCCAGTCAAAGTCTTGACGAAAATCTGCAT 5749 >seq278817 Length=610 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | ||||||| || |||||||| ||||| || |||||| ||| || Sbjct 460 ACCAAATGAAGGGTTGACTCCTTCTGAATGTTATAGTCAGCCAGGGTACGACCATCCTCC 519 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | ||| || || | | |||| || | ||| ||||||||||| |||||||| || || | Sbjct 520 AACTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTGA 579 Query 132035 ATTTT 132039 ||||| Sbjct 580 ATTTT 584 >seq11074 Length=8391 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || ||||| | ||| | | || ||||| || || ||||| ||| | ||||| | Sbjct 695 CGTAAAACAAGATGAAGAGTAGATTCTTTCTGGATATTGTAATCGGCTAAAGTACGACCA 636 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| || |||||||| | | |||| ||||| |||||||| || || ||||||||||| Sbjct 635 TCTTCAAGTTGTTTACCAGCAAAGATAAGACGTTGTTGATCAGGTGGGATGCCTTCTTTG 576 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || ||| | | || | || || | | || ||||| | || | Sbjct 575 TCTTGGATCTTGGTTTTGACATTGTCGATTGTGTCTGATGATTCAACTTCTAGGGTTATT 516 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||| || ||||| | ||| |||||||| Sbjct 515 GTTTTGCCAGTTAGGGTTTTCACGAATATCTGCAT 481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474777915019200