Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq59535 95.1 1e-14 seq5402 89.7 5e-13 seq18408 82.4 7e-11 >seq59535 Length=2228 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || ||||| | || |||||||| ||||||| ||| | ||||| |||| || ||| || Sbjct 1754 AAAATGCAGATCTTCGTAAAAACCCTAACCGGCAAAACAATCACCCTCGAGGTTGAATCC 1695 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 ||| || ||||| | || ||| ||||| || ||||| || || || || || Sbjct 1694 TCCGACACAATCGACAATGTCAAAACCAAAATCCAAGACAAAGAAGGAATCCCACCAGAC 1635 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTAC 25351 || ||| | || || | || ||| |||||||||||||||| | | || ||| ||| Sbjct 1634 CAACAACGTCTAATCTTCGCCGGAAAACAACTCGAAGATGGCCGTACCCTCGCCGACTAC 1575 Query 25352 AATATTCAAAAAGAATCCAC 25371 || || || || |||||||| Sbjct 1574 AACATCCAGAAGGAATCCAC 1555 >seq5402 Length=17369 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| |||| || || | || || |||||||||| | Sbjct 5473 ATGCAAATCTTTGTGAAAACCCTAACTGGCAAGACAATTACTCTCGAAGTCGAGAGTTCC 5532 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || ||| || ||| ||||| ||||| || || || || ||| Sbjct 5533 GACACCATTGACAATGTCAAAACCAAGATTCAGGATAAGGAGGGCATTCCTCCAGACCAG 5592 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||||| || | | || |||||||| || |||| ||| | | ||||| || Sbjct 5593 CAAAGACTGATCTTTGCTGGGAAACAACTTGAGGATGGCCGAACTCTTGCTGATTATAAC 5652 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||| ||||| || ||| |||| | ||| | | ||||| ||||| Sbjct 5653 ATTCAGAAAGAGTCTACCCTTCACCTTGTGCTTCGTTTGAGGGGAGG 5699 >seq18408 Length=6019 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || ||||| | || || |||||||||||||| || | || || || ||||| ||| || Sbjct 881 AAGATGCAGATATTCGTGAAAACATTAACCGGCAAGACAATAACCATGGAAGTTGAA-CC 823 Query 25232 AAC-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | | || | ||| | | | || ||||| || |||||||| || || ||||| Sbjct 822 ATCTGACTCAATCAACAACATTAAGTCCAAAATCCAGGACAAAGAGGGCATCCCACCCGA 763 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATT 25349 |||||| | || || | | |||||| ||||| |||||||| ||| || ||| || | Sbjct 762 CCAGCAACGCCTTATATTTGCCGGCAAGCAACTTGAAGATGAACGAACCGT-AGCAGACT 704 Query 25350 ACAATATTCAAAAAGAATCCACCATTCA 25377 |||| || || || || ||||| |||| Sbjct 703 ACAACATCCAGAAGGAGTCCACTCTTCA 676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 443382344390400