Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2381 174 2e-37 seq21835 136 6e-26 seq33024 134 2e-25 >seq2381 Length=21385 Score = 174 bits (192), Expect = 2e-37 Identities = 404/592 (68%), Gaps = 24/592 (4%) Strand=Plus/Minus Query 1455730 CGATAACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGT 1455788 ||| |||||| |||| || ||| ||||||| ||| |||| | || |||||||||| Sbjct 14572 CGAAAACCCGGACCGGTTCTGTA-TGTTCCCAATCAAATACCCTCAAATCTGGGAAATGT 14514 Query 1455789 ACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGA-CAC 1455847 || | |||| |||| || ||||| ||||||||||| || || ||||| | |||| | | Sbjct 14513 ACAAGAAAG-CCGAAGCATCCTTCTGGACCGCCGAAGAAGTTGACCTATCCTCCGATCTC 14455 Query 1455848 GGTCCACTGG---GTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGC 1455904 | | ||||| | | || | ||| |||||||| ||||||| ||||| ||||| Sbjct 14454 CGAC-ACTGGTCCGACACACTCACGCCCGATGAGCGCCACTTCATCACTCACGTGCTCGC 14396 Query 1455905 CTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAG 1455964 ||| ||| || ||| || || || || ||| || || || |||||| || || | Sbjct 14395 CTTCTTT-GCTGCCTCTGACGGTATTGTTCTCGAAAATCTCGCTTCCCGCTTCATCAAGG 14337 Query 1455965 AGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCC 1456024 || ||||| | || || || ||| |||||||| ||||| || || ||||||||||| | Sbjct 14336 AGATCCAACTCCCTGAAGCGCGTGCATTTTACGGTTTCCAAATTGCTATCGAAAACATTC 14277 Query 1456025 ACTCTGAAACCTACTCGCTCCTGATCGACACCTA-CGTCAAGGACCCGGTCGAGAAGGAC 1456083 | || |||| || || ||||| | || ||||| ||||| ||| | || ||| Sbjct 14276 ATTCCGAAATGTATTCTCTCCTTCTTGATACCTATATTCAAGATTCCGCT-GAAAAGTCG 14218 Query 1456084 CACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATG 1456143 |||||||| || | || ||| | ||| | || | | ||||| || ||||| | Sbjct 14217 AGTCTCTTTCGTGCTCTGGAAACGATTCCGACTGTCAAGCGTAAGGCTGATTGGGCCTTA 14158 Query 1456144 AAGTGGATCAACAAGG-AGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGC-CGC 1456201 ||||| ||| || || ||| ||||| ||||| | | | ||||| | Sbjct 14157 CGCTGGAT--ACACGGTTCGGAATCG----TTTGCAGAGCGAATAATTGCATTTGCTTGT 14104 Query 1456202 GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGC 1456261 || || || || || ||||| || || |||||||| || || ||||| || ||||| || Sbjct 14103 GTTGAAGGGATATTCTTCTCTGGAAGCTTCTGCGCTATATTCTGGCTGAAAAAGCGTGGT 14044 Query 1456262 CTCATGCCCGGTCT--TCTGCTTTAGCAACGAATTTATCAGTCGCGACGAAG 1456311 | ||||| || || || || | ||||| || || ||| ||||||| Sbjct 14043 TTAATGCCTGGACTAACCTTCTCT---AACGAGTTAATTTCTCGAGACGAAG 13995 >seq21835 Length=5166 Score = 136 bits (150), Expect = 6e-26 Identities = 160/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 || ||||| ||||| || || || |||||| |||| | ||| |||| |||| || Sbjct 2918 ATTTACAAAGTGCTGAAACAAGTCCACCCCGACACCGGT-----ATC-TCCAGCAAGGCC 2971 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||||||||| || |||||||| |||| | |||| | |||||||| | Sbjct 2972 ATGTCCATCATGAACTCGTTCGTGAACGACATCTTCGAGAGGATCGCCGCCGAGGCCAGC 3031 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || ||||||| | ||| ||| | | || |||||||||||||| || Sbjct 3032 CGTCTCGCCCACTACAACAAGAGGTCCACCATCACCTCTCGGGAGATCCAGACCGCTGTC 3091 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGC 725125 || || || ||| ||| ||| |||||| |||||| Sbjct 3092 CGTCTCCTCCTGCCCGGAGAATTGGCCAAGCACGC 3126 >seq33024 Length=3557 Score = 134 bits (148), Expect = 2e-25 Identities = 354/531 (67%), Gaps = 17/531 (3%) Strand=Plus/Minus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| ||| | || | || |||||||||||| |||||| |||| || || || Sbjct 1896 TGTTCCCAATCAAATTCCCCCAAATCTGGGAAATGTACAAAAAAG-CCGAAGCTTCTTTC 1838 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGAC--ACGGTCCACTGG---GTGTCGCTGA 1455867 ||||| || || || ||||| | |||| ||| |||||| | | |||| Sbjct 1837 TGGACTGCTGAAGAAGTCGATTTATCTTCCGATTTACGT--CACTGGTCCGACACTCTGA 1780 Query 1455868 GCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGC 1455927 ||| || || |||||||||| ||||| |||||||| || |||||| || || Sbjct 1779 CGTCCGATGAACGTCATTTCATCACTCACGTGCTCGCCTTCTT-CGCCGCATCTGACGGT 1721 Query 1455928 ATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGT 1455987 || ||| ||||| || || | || || ||||| || || ||| | || || || | Sbjct 1720 ATTGTGCTGGAGAATCTCGCTTGTCGTTTCATGAAGGAAGTTCAACTTCCTGAAGCGAGA 1661 Query 1455988 TTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTG 1456047 ||||||||||| || ||||| |||||||| ||||| || |||| ||||| | | Sbjct 1660 GCATTTTACGGGTTTCAAATCGCTATCGAAAATATCCATTCCGAAATGTACTCCTTATTA 1601 Query 1456048 ATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACG 1456107 | || || ||| | ||||| ||| || || | || || || | || || Sbjct 1600 TTGGAGACTTACATTAAGGATTCGGAGGAAAAATCGGGTTTATTCCGTGCTGTTGAGACT 1541 Query 1456108 GTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTC 1456167 | || | || | | ||||| || ||||| || |||||| || || ||| Sbjct 1540 ATCCCCGCTGTCAAGCGCAAGGCTGATTGGGCCTTGCGCTGGATCGAC--GGCGGG---- 1487 Query 1456168 GACACTTT-GCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGC 1456225 || | ||| || ||||| | |||| || || | || || || || || ||||| || Sbjct 1486 GAGAGTTTCGCTGAGCGAATTGTCGCTTTCGCTTGTGTTGAAGGGATATTCTTCTCTGGA 1427 Query 1456226 AGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTT 1456276 || |||||||| || |||||||||||||| || || | ||||| || ||| Sbjct 1426 AGCTTCTGCGCGATATTTTGGCTCAAGAAACGAGGATTAATGCCGGGGCTT 1376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7148131040410640