Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq1 549 2e-151 >seq1 Length=146306 Score = 549 bits (608), Expect = 2e-151 Identities = 720/992 (73%), Gaps = 5/992 (1%) Strand=Plus/Plus Query 180981 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 181040 ||||| | ||| |||| ||| | |||||||| || |||| ||||| || || || Sbjct 87867 TTCTGTAACTGGATAACCAGCACCGAAAACCGCCTTTACATCGGGTGGTTTGGTGTTTTG 87926 Query 181041 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 181099 ||||| || || | ||| | |||||| ||||| || || | |||||| | |||||||| Sbjct 87927 ATGATCCCTACATTATTGACTGCAACT-TCTGTATTTATTATAGCCTTCATTGCTGCTCC 87985 Query 181100 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 181159 || || || || || || || |||||||| || |||| || || | || || ||||| Sbjct 87986 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 88045 Query 181160 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 181219 || || |||||||| || |||| |||| || || || | ||||| ||||| || Sbjct 88046 TATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAAT 88105 Query 181220 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 181279 |||||||| ||||| ||||||||||| | || || |||||||||| | || | || Sbjct 88106 ATGGGAAGCAGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 88165 Query 181280 CTTTCACTTCCTTATCGGCATTTATGCATACATGGGACGTGAATGGGAACTCTCTTACCG 181339 | |||||| | | || | | || ||||| ||||| |||||||| || ||| Sbjct 88166 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 88225 Query 181340 CTTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCAGCAGCATCTGC 181399 | |||||||| || ||||| ||||||||| || ||||| || || || || |||| Sbjct 88226 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCGGTTGCGGCGGCTACTGC 88285 Query 181400 TGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCAT 181459 || ||| | |||| || |||||||||| ||| ||||| | ||||| || || || Sbjct 88286 GGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 88345 Query 181460 CTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATTCTGATGCATCC 181519 |||||||| ||||||| |||| |||| ||||| || ||||||||||| || ||||| || Sbjct 88346 TTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 88405 Query 181520 CTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCACTGTTCAGTGCAATGCACGG 181579 || |||||||||||||| || |||||||| || || || || || ||||| ||||| || Sbjct 88406 ATTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 88465 Query 181580 TTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATGG 181639 ||| ||||| || ||| | || | || || || |||| ||| || || | || Sbjct 88466 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 88525 Query 181640 TTACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCCGCCCACGGTTACTTTGG 181699 ||||| ||||| ||||| ||||| || || || ||||| || || || ||||| ||||| Sbjct 88526 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGG 88585 Query 181700 TCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGC 181759 ||| || ||||||||||||||| ||||| || || ||||| | ||||||||| | || Sbjct 88586 TCGATTAATCTTCCAATATGCTAGTTTCAATAATTCTCGTTCTTTACACTTCTTCTTAGC 88645 Query 181760 AGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAA 181819 || ||||| ||||| || || ||||| || || | || | ||||| ||||| || || Sbjct 88646 TGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCGTTCAA 88705 Query 181820 CCTCAATGGATTCAACTTCAACCAGTCTATCCTCGACGGACAAGGACGTGTCCTCAACAC 181879 | | ||||| ||||| |||||||| ||| | | || | ||||| ||||| | || || Sbjct 88706 CTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC 88765 Query 181880 CTGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACGC 181939 ||||| || | | |||||||| || || |||||||| ||||| || || || || Sbjct 88766 TTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 88825 Query 181940 GCACAACTTCCCGCTTGATCTTGCAGCAGCTG 181971 || |||||||| || || ||| ||| |||| Sbjct 88826 TCATAACTTCCCTCTAGA-CTT--AGCTGCTG 88854 Score = 509 bits (564), Expect = 2e-139 Identities = 727/1017 (71%), Gaps = 6/1017 (1%) Strand=Plus/Minus Query 182360 GTTCGATGTCCTGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGG 182419 ||| ||| | |||| |||||| | | || || || || ||||| ||||||||||| Sbjct 58152 GTTTGATATTATGGATGACTGGTTACGTAGAGACCGTTTCGTTTTTGTAGGTTGGTCTGG 58093 Query 182420 ACTCCTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTT 182479 || | || |||| ||||||| | || | || |||||| |||| || || | || Sbjct 58092 TCTATTGCTCTTTCCTTGTGCTTATTTCGCTGTAGGGGGTTGGTTTACGGGTACGACGTT 58033 Query 182480 TGTTACGAGTTGGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTC 182538 ||| ||| ||||| ||||| || | || ||||||| | ||||| ||| | |||| Sbjct 58032 TGTAACGTCATGGTATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGCAA--TTTC 57975 Query 182539 TTA-CGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGG 182597 ||| | ||||| || || || |||||| || | | | || ||| | | | || ||| Sbjct 57974 TTAACCGCAGCCGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTGCTGTGG 57915 Query 182598 GGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTC 182657 |||||||| | || || |||| || ||||| ||| | || || || |||| ||| Sbjct 57914 GGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTT 57855 Query 182658 GTGGCTCTCCACGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCT 182717 || ||||| || || || |||| || || ||||| ||| | | ||||| ||||||||| Sbjct 57854 GTTGCTCTTCATGGCGCTTTCGGACTAATAGGTTTTATGTTACGCCAATTCGAACTTGCT 57795 Query 182718 CGC-CTGATTGGAATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATT 182776 || ||| || | | | ||||| ||||| || || || ||||| || |||||||| || Sbjct 57794 CGATCTG-TTCAATTGCGCCCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTT 57736 Query 182777 CGTCAGTGTGTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTT 182836 || ||| ||||| || ||||| | || ||||| |||||| || ||||| || Sbjct 57735 TGTTTCTGTATTCCTAATTTATCCACTAGGCCAGTCTGGTTGGTTCTTTGCGCCTAGTTT 57676 Query 182837 TGGTGTCGCGGCGATCTTCAGGTTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACACT 182896 |||||| || || || ||| | ||| | | || |||| || || || || ||||| || Sbjct 57675 TGGTGTAGCAGCCATATTCCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGCT 57616 Query 182897 CAACCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCTAT 182956 ||||| || ||||||||||| ||||||||| || |||| | || ||||| ||||||| Sbjct 57615 GAACCCTTTTCATATGATGGGGGTTGCTGGTGTATTGGGCGCCGCTCTGCTATGTGCTAT 57556 Query 182957 CCATGGTGTCACAGTAGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACATTTAA 183016 ||||||| || ||||| ||||| || | ||||||||| || |||||| ||||| Sbjct 57555 TCATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGGGCAAATACATTCCG 57496 Query 183017 AGCGTTCGATTCCACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTG 183076 || || | | || || | ||||| || ||||| ||||| || || || |||||||| Sbjct 57495 GGCTTTTAACCCAACCCAAGCTGAGGAAACTTATTCAATGGTCACCGCTAACCGTTTTTG 57436 Query 183077 GTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTT 183136 ||| |||||||| |||||||| ||| |||||| |||||||| || ||||||||||| || Sbjct 57435 GTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATT 57376 Query 183137 TGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGGATCATTGGGCTTGCTCTTAATCT 183196 ||| || || | ||| | ||| | | || ||||| | | || || || | || || Sbjct 57375 TGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACCT 57316 Query 183197 TCGTGCTTATGATTTTGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGAC 183256 ||||| ||||| || || || || || | ||||| ||||||||||| || ||||| Sbjct 57315 ACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCCGAAGATCCTGAATTTGAGAC 57256 Query 183257 GTTCTACACAAAGAACATCCTTCTCAATGAAGGACTACGTGCTTGGTTGGCACCTGCCGA 183316 |||||||| || || || || | || ||||| | ||||||||| |||| || || Sbjct 57255 TTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGA 57196 Query 183317 TCAACCACATGAAAACTTCATCTTCCCTGAAGAAGTTCTACCTAGAGGTAACGCACT 183373 ||| || ||||||||| | || |||||||| || |||||||| | || ||||| || Sbjct 57195 TCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 57139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612253473401600