Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq1 560 2e-154 >seq1 Length=146306 Score = 560 bits (620), Expect = 2e-154 Identities = 711/973 (73%), Gaps = 4/973 (0%) Strand=Plus/Plus Query 174489 ACCAACAATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCC 174548 ||| | || || |||||| |||| ||||| |||||| | ||||| |||||||| || | Sbjct 87888 ACCGAAAACCGCCTTTACATCGGGTGGTTTGGTGTTTTGATGATCCCTACATTATTGACT 87947 Query 174549 GCAACTGTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAAT 174607 |||||| | ||| || ||||| || ||| | | |||||| ||||| || || || || || Sbjct 87948 GCAACT-TCTGTATTTATTATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTAT 88006 Query 174608 CCGTGAACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGT 174667 |||||||| || |||| || || | || |||||||| || || |||||||| || | Sbjct 88007 TCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCCATTAT 88066 Query 174668 TCCTAGTTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGA 174727 ||||| ||| || || || | ||||| || ||||| ||||||||||| | | || Sbjct 88067 TCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATATGGGAAGCAGCATCTGTTGA 88126 Query 174728 CGAATGGCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTAT 174787 || ||| | ||||| |||||||||| | ||| |||| | |||||| | ||||| | Sbjct 88127 TGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT 88186 Query 174788 CTACGCCTATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGAT 174847 |||||||| |||||||||||||| || ||| | |||||| | |||||||| Sbjct 88187 AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT 88246 Query 174848 CTGTGTAGCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTT 174907 ||| ||||| || || || ||||| || ||| | || || ||| | |||| || | Sbjct 88247 TGCTGTTGCATATTCAGCTCCGGTTGCGGCGGCTACTGCGGTTTTCTTGATCTACCCAAT 88306 Query 174908 CGGTCAAGGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACAT 174967 ||||||||| || || || | ||||| | || || ||||| || ||||||| ||| Sbjct 88307 CGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCAT 88366 Query 174968 GTTGGTCTTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGC 175027 | | || ||||| || || || |||||| | |||||||| || ||||||||||| || || Sbjct 88367 GATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAGC 88426 Query 175028 AGGTGTCTTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACT 175087 ||||| ||||| || || | || || ||||||||||| |||| || || | | Sbjct 88427 TGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTC-CTTGGTAACTTCTAGTT 88485 Query 175088 TG-TCCGTGAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAG 175146 || || | || || || |||| ||| || || | ||||||| ||||| ||||| | Sbjct 88486 TGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGG 88545 Query 175147 AAGAGACCTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACG 175206 |||| || ||||| ||||| || || ||||| || || ||||| || ||||||||||| | Sbjct 88546 AAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGTCGATTAATCTTCCAATATG 88605 Query 175207 CTTCATTCAACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTA 175266 || ||||| || || || || | |||||||||||||| || ||||| || || |||| Sbjct 88606 CTAGTTTCAATAATTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCGGTAGTAGGTA 88665 Query 175267 TCTGGTTCACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTCA 175326 | ||||| || || | ||| || ||| ||||| |||||| | ||||||||||| |||| Sbjct 88666 TTTGGTTTACTGCTTTAGGTATTAGCACTATGGCGTTCAACTTAAATGGTTTCAATTTCA 88725 Query 175327 ACCAGTCTGTTATCGACGGACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCTTAACA 175386 |||| ||||| | || | |||||| | ||| | || || ||||| ||| | ||||| Sbjct 88726 ACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATCATTAACC 88785 Query 175387 GAGCTGGTCTTGGGATGGAAGTAATGCATGAGAGAAATGCACACAACTTCCCACTAGATT 175446 | ||| ||||| |||||||| |||||||| | ||||| || |||||||| ||||| | Sbjct 88786 GTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACT 88845 Query 175447 TGGCAGCAGCTGA 175459 | || || | ||| Sbjct 88846 TAGCTGCTGTTGA 88858 Score = 430 bits (476), Expect = 2e-115 Identities = 704/1012 (70%), Gaps = 2/1012 (0%) Strand=Plus/Minus Query 175850 GTATGATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGGTCTGG 175909 || ||||||| |||| |||||| | | ||||| | || | ||| | || |||||||| Sbjct 58152 GTTTGATATTATGGATGACTGGTTACGTAGAGACCGTTTCGTTTTTGTAGGTTGGTCTGG 58093 Query 175910 ATTACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTT 175969 || | || |||| ||||||| | || | || || ||| |||| || || || || Sbjct 58092 TCTATTGCTCTTTCCTTGTGCTTATTTCGCTGTAGGGGGTTGGTTTACGGGTACGACGTT 58033 Query 175970 TGTCACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGG-TGCTAACTTTC 176028 ||| ||| ||||| |||||||| | || ||||||| | || || ||| || || Sbjct 58032 TGTAACGTCATGGTATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGC-AATTTCT 57974 Query 176029 TCACAGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGG 176088 | || || || || || ||||||||| || | | | || ||| | | | || |||| Sbjct 57973 TAACCGCAGCCGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTGCTGTGGG 57914 Query 176089 GTCCTGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTG 176148 |||||||| | || || || || || ||| ||| | || || || ||| | |||| Sbjct 57913 GTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTTG 57854 Query 176149 TTGCTCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAA 176208 ||||||| || || || |||| || || || || ||| | || || || ||||| || Sbjct 57853 TTGCTCTTCATGGCGCTTTCGGACTAATAGGTTTTATGTTACGCCAATTCGAACTTGCTC 57794 Query 176209 GACTCATTGGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTG 176268 || || | || || || || || || |||||| ||| || || ||||| |||| Sbjct 57793 GATCTGTTCAATTGCGCCCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTTTG 57734 Query 176269 TCAGTGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTG 176328 | ||| || || | || |||||||| || ||| ||||||||||| || |||| Sbjct 57733 TTTCTGTATTCCTAATTTATCCACTAGGCCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTG 57674 Query 176329 GTGTGGCAGCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGACACTGA 176388 |||| ||||| || || ||||| | | ||| |||| || || || || ||||| |||| Sbjct 57673 GTGTAGCAGCCATATTCCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGCTGA 57614 Query 176389 ACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCC 176448 |||| || ||||||||||| ||||||||| || | || | || || |||| ||| || | Sbjct 57613 ACCCTTTTCATATGATGGGGGTTGCTGGTGTATTGGGCGCCGCTCTGCTATGTGCTATTC 57554 Query 176449 ATGGCGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAACAACACCTTCACTG 176508 |||| | ||| || |||||||| ||| ||||||||| || | || || ||| | Sbjct 57553 ATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGGGCAAATACATTCCGGG 57494 Query 176509 CGTTCGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGT 176568 | || | | || || | || || || ||||| ||||| || || ||||| || |||| Sbjct 57493 CTTTTAACCCAACCCAAGCTGAGGAAACTTATTCAATGGTCACCGCTAACCGTTTTTGGT 57434 Query 176569 CGCAAATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTG 176628 | |||||||| |||||||| ||| ||||| |||||| | || ||||||||||| |||| Sbjct 57433 CCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTG 57374 Query 176629 TCCCTGTCATGGGTCTTTGGGTCTCAAGTATTGGCATCATTGGGCTTGCTCTTAATCTTC 176688 | || || | ||| | ||| | | |||| | | || || || | || || | Sbjct 57373 TACCAGTAACCGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACCTAC 57314 Query 176689 GTGCTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTTGAAACTT 176748 |||| ||||| || || ||| || || | ||||| ||||||||||| ||||| |||| Sbjct 57313 GTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCCGAAGATCCTGAATTTGAGACTT 57254 Query 176749 TCTACACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATGGCACCTGTGGATC 176808 ||||||| || || || || | |||||||| | | || |||||||| || |||| Sbjct 57253 TCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATC 57194 Query 176809 AACCACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAGAGGTAACGC 176860 | || ||||| || ||||||| || || |||||||| | || ||||| Sbjct 57193 AGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGC 57142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 727121925793600