Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20
2015-10-23] 307,720 sequences; 665,278,925 total letters
Query= NC_026928.1
Length=189418
Score E
Sequences producing significant alignments: (Bits) Value
seq1 554 5e-153
>seq1
Length=146306
Score = 554 bits (614), Expect = 5e-153
Identities = 721/992 (73%), Gaps = 5/992 (1%)
Strand=Plus/Plus
Query 177849 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177908
||||| | ||| |||| ||| | |||||||| || |||| ||||| || || ||
Sbjct 87867 TTCTGTAACTGGATAACCAGCACCGAAAACCGCCTTTACATCGGGTGGTTTGGTGTTTTG 87926
Query 177909 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 177967
||||| || || | ||| | |||||| ||||| || || | |||||| | ||||||||
Sbjct 87927 ATGATCCCTACATTATTGACTGCAACT-TCTGTATTTATTATAGCCTTCATTGCTGCTCC 87985
Query 177968 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAA 178027
|| || || || || || || |||||||| || |||| || || | || || |||||
Sbjct 87986 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 88045
Query 178028 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 178087
|| || |||||||| || |||| |||| || || || | ||||| ||||| ||
Sbjct 88046 TATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAAT 88105
Query 178088 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 178147
|||||||| ||||| ||||||||||| | || || |||||||||| | || | ||
Sbjct 88106 ATGGGAAGCAGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 88165
Query 178148 ATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACCG 178207
| |||||| | ||||| | | || ||||| ||||||||||||||| | |||
Sbjct 88166 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 88225
Query 178208 TTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTAGCAGCAGCATCGGC 178267
| | |||||||| || ||||| ||| ||||| || ||||| || || || || | ||
Sbjct 88226 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCGGTTGCGGCGGCTACTGC 88285
Query 178268 AGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGCAATGCCACTTGGCAT 178327
|| ||| || |||| || |||||||||| |||||||| | ||||| || || ||
Sbjct 88286 GGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 88345
Query 178328 CTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAACATTCTGATGCACCC 178387
|||||||| ||||||| |||| |||| ||||| || || |||||||| || ||||||||
Sbjct 88346 TTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 88405
Query 178388 CTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTCAGTGCAATGCACGG 178447
|| |||||||||||||| || ||||||||||| || || || || ||||| ||||| ||
Sbjct 88406 ATTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 88465
Query 178448 TTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACTGAAACAGAATCACAGAACTATGG 178507
||| ||||| || ||| | | | ||||| || |||| ||||| || | ||
Sbjct 88466 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 88525
Query 178508 TTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCGG 178567
||| | ||||| ||||| ||||| || || || ||||| || || ||||| || || ||
Sbjct 88526 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGG 88585
Query 178568 TCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGC 178627
||| || ||||||||||||||| ||||| || || ||||| | ||||||||| | ||
Sbjct 88586 TCGATTAATCTTCCAATATGCTAGTTTCAATAATTCTCGTTCTTTACACTTCTTCTTAGC 88645
Query 178628 AGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAA 178687
|| ||||| ||||| || || ||||| || || | || | ||||| ||||| || ||
Sbjct 88646 TGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCGTTCAA 88705
Query 178688 CCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACAC 178747
| | ||||| ||||| |||||||| || | | || | ||||| ||||| | || ||
Sbjct 88706 CTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC 88765
Query 178748 ATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACGC 178807
||||| || | | |||||||| || || |||||||| ||||| || || || ||
Sbjct 88766 TTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 88825
Query 178808 GCACAACTTCCCGCTTGATCTTGCAGCAGCTG 178839
|| |||||||| || || ||| ||| ||||
Sbjct 88826 TCATAACTTCCCTCTAGA-CTT--AGCTGCTG 88854
Score = 473 bits (524), Expect = 1e-128
Identities = 710/1002 (71%), Gaps = 6/1002 (1%)
Strand=Plus/Minus
Query 179222 GTTCGATGTCCTGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGG 179281
||| ||| | |||| |||||| | | || || || || ||||| |||||||||||
Sbjct 58152 GTTTGATATTATGGATGACTGGTTACGTAGAGACCGTTTCGTTTTTGTAGGTTGGTCTGG 58093
Query 179282 ACTCCTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTT 179341
|| | || |||| ||||||| | || | || |||||| |||| || || | ||
Sbjct 58092 TCTATTGCTCTTTCCTTGTGCTTATTTCGCTGTAGGGGGTTGGTTTACGGGTACGACGTT 58033
Query 179342 TGTTACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGG-TGCTAACTTTC 179400
||| ||| ||||| ||||| || | || ||||||||| | || || ||| | ||||
Sbjct 58032 TGTAACGTCATGGTATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGCAA--TTTC 57975
Query 179401 TTA-CGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGG 179459
||| | ||||| || || || |||||| || | | | || ||| | | | || |||
Sbjct 57974 TTAACCGCAGCCGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTGCTGTGG 57915
Query 179460 GGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTC 179519
|||||||| | || || |||| || ||||| ||| | || || || |||| |||
Sbjct 57914 GGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTT 57855
Query 179520 GTGGCTCTCCACGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCT 179579
|| ||||| || || || |||| || || ||||| ||| | | ||||| |||||||||
Sbjct 57854 GTTGCTCTTCATGGCGCTTTCGGACTAATAGGTTTTATGTTACGCCAATTCGAACTTGCT 57795
Query 179580 CGC-CTGATTGGTATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATT 179638
|| ||| | | | | ||||| ||||| || || || ||||| || |||||||| ||
Sbjct 57794 CGATCTGTTCAATTGC-GCCCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTT 57736
Query 179639 CGTCAGTGTTTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTT 179698
|| ||| ||||| || ||||| | || ||||| |||||| || ||||| ||
Sbjct 57735 TGTTTCTGTATTCCTAATTTATCCACTAGGCCAGTCTGGTTGGTTCTTTGCGCCTAGTTT 57676
Query 179699 TGGTGTCGCGGCGATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACGCT 179758
|||||| || || || ||| | ||| | || || |||| || || || || ||||||||
Sbjct 57675 TGGTGTAGCAGCCATATTCCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGCT 57616
Query 179759 CAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTAT 179818
||||| || ||||||||||| ||||||||| || | || | || ||||| |||||||
Sbjct 57615 GAACCCTTTTCATATGATGGGGGTTGCTGGTGTATTGGGCGCCGCTCTGCTATGTGCTAT 57556
Query 179819 CCATGGAGTTACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAA 179878
||||| | ||| ||||| ||||| || | ||||||||| || |||||||| ||
Sbjct 57555 TCATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGGGCAAATACATTCCG 57496
Query 179879 GGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTG 179938
||| ||| | | || || | || || |||||||| |||||||| || ||||| || ||
Sbjct 57495 GGCTTTTAACCCAACCCAAGCTGAGGAAACTTATTCAATGGTCACCGCTAACCGTTTTTG 57436
Query 179939 GTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTT 179998
||| || ||||| || |||| ||||| || || || ||| | ||||| || ||||| ||
Sbjct 57435 GTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATT 57376
Query 179999 TGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCT 180058
||| || || | ||| |||||| || |||| | | ||||| || | |||||
Sbjct 57375 TGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACCT 57316
Query 180059 TCGTGCTTACGATTTCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAGTTTGAGAC 180118
||||| || || ||||| ||||| ||| | ||||| |||||||| || ||||||||
Sbjct 57315 ACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCCGAAGATCCTGAATTTGAGAC 57256
Query 180119 CTTCTACACCAAGAACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGCACCAGTTGA 180178
||||||||||| || ||||| | || ||||| | ||||| ||| |||| | ||
Sbjct 57255 TTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGA 57196
Query 180179 TCAACCACATGAGTCATTCGTATTCCCAGAAGAAGTTCTGCC 180220
||| || ||||| | ||||||| || || ||||| ||
Sbjct 57195 TCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 57154
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 603678584073600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |