Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq1 554 5e-153 >seq1 Length=146306 Score = 554 bits (614), Expect = 5e-153 Identities = 721/992 (73%), Gaps = 5/992 (1%) Strand=Plus/Plus Query 177849 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177908 ||||| | ||| |||| ||| | |||||||| || |||| ||||| || || || Sbjct 87867 TTCTGTAACTGGATAACCAGCACCGAAAACCGCCTTTACATCGGGTGGTTTGGTGTTTTG 87926 Query 177909 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 177967 ||||| || || | ||| | |||||| ||||| || || | |||||| | |||||||| Sbjct 87927 ATGATCCCTACATTATTGACTGCAACT-TCTGTATTTATTATAGCCTTCATTGCTGCTCC 87985 Query 177968 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAA 178027 || || || || || || || |||||||| || |||| || || | || || ||||| Sbjct 87986 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 88045 Query 178028 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 178087 || || |||||||| || |||| |||| || || || | ||||| ||||| || Sbjct 88046 TATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAAT 88105 Query 178088 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 178147 |||||||| ||||| ||||||||||| | || || |||||||||| | || | || Sbjct 88106 ATGGGAAGCAGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 88165 Query 178148 ATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACCG 178207 | |||||| | ||||| | | || ||||| ||||||||||||||| | ||| Sbjct 88166 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 88225 Query 178208 TTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTAGCAGCAGCATCGGC 178267 | | |||||||| || ||||| ||| ||||| || ||||| || || || || | || Sbjct 88226 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCGGTTGCGGCGGCTACTGC 88285 Query 178268 AGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGCAATGCCACTTGGCAT 178327 || ||| || |||| || |||||||||| |||||||| | ||||| || || || Sbjct 88286 GGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 88345 Query 178328 CTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAACATTCTGATGCACCC 178387 |||||||| ||||||| |||| |||| ||||| || || |||||||| || |||||||| Sbjct 88346 TTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 88405 Query 178388 CTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTCAGTGCAATGCACGG 178447 || |||||||||||||| || ||||||||||| || || || || ||||| ||||| || Sbjct 88406 ATTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 88465 Query 178448 TTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACTGAAACAGAATCACAGAACTATGG 178507 ||| ||||| || ||| | | | ||||| || |||| ||||| || | || Sbjct 88466 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 88525 Query 178508 TTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCGG 178567 ||| | ||||| ||||| ||||| || || || ||||| || || ||||| || || || Sbjct 88526 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGG 88585 Query 178568 TCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGC 178627 ||| || ||||||||||||||| ||||| || || ||||| | ||||||||| | || Sbjct 88586 TCGATTAATCTTCCAATATGCTAGTTTCAATAATTCTCGTTCTTTACACTTCTTCTTAGC 88645 Query 178628 AGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAA 178687 || ||||| ||||| || || ||||| || || | || | ||||| ||||| || || Sbjct 88646 TGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCGTTCAA 88705 Query 178688 CCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACAC 178747 | | ||||| ||||| |||||||| || | | || | ||||| ||||| | || || Sbjct 88706 CTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC 88765 Query 178748 ATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACGC 178807 ||||| || | | |||||||| || || |||||||| ||||| || || || || Sbjct 88766 TTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 88825 Query 178808 GCACAACTTCCCGCTTGATCTTGCAGCAGCTG 178839 || |||||||| || || ||| ||| |||| Sbjct 88826 TCATAACTTCCCTCTAGA-CTT--AGCTGCTG 88854 Score = 473 bits (524), Expect = 1e-128 Identities = 710/1002 (71%), Gaps = 6/1002 (1%) Strand=Plus/Minus Query 179222 GTTCGATGTCCTGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGG 179281 ||| ||| | |||| |||||| | | || || || || ||||| ||||||||||| Sbjct 58152 GTTTGATATTATGGATGACTGGTTACGTAGAGACCGTTTCGTTTTTGTAGGTTGGTCTGG 58093 Query 179282 ACTCCTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTT 179341 || | || |||| ||||||| | || | || |||||| |||| || || | || Sbjct 58092 TCTATTGCTCTTTCCTTGTGCTTATTTCGCTGTAGGGGGTTGGTTTACGGGTACGACGTT 58033 Query 179342 TGTTACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGG-TGCTAACTTTC 179400 ||| ||| ||||| ||||| || | || ||||||||| | || || ||| | |||| Sbjct 58032 TGTAACGTCATGGTATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGCAA--TTTC 57975 Query 179401 TTA-CGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGG 179459 ||| | ||||| || || || |||||| || | | | || ||| | | | || ||| Sbjct 57974 TTAACCGCAGCCGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTGCTGTGG 57915 Query 179460 GGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTC 179519 |||||||| | || || |||| || ||||| ||| | || || || |||| ||| Sbjct 57914 GGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTT 57855 Query 179520 GTGGCTCTCCACGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCT 179579 || ||||| || || || |||| || || ||||| ||| | | ||||| ||||||||| Sbjct 57854 GTTGCTCTTCATGGCGCTTTCGGACTAATAGGTTTTATGTTACGCCAATTCGAACTTGCT 57795 Query 179580 CGC-CTGATTGGTATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATT 179638 || ||| | | | | ||||| ||||| || || || ||||| || |||||||| || Sbjct 57794 CGATCTGTTCAATTGC-GCCCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTT 57736 Query 179639 CGTCAGTGTTTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTT 179698 || ||| ||||| || ||||| | || ||||| |||||| || ||||| || Sbjct 57735 TGTTTCTGTATTCCTAATTTATCCACTAGGCCAGTCTGGTTGGTTCTTTGCGCCTAGTTT 57676 Query 179699 TGGTGTCGCGGCGATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACGCT 179758 |||||| || || || ||| | ||| | || || |||| || || || || |||||||| Sbjct 57675 TGGTGTAGCAGCCATATTCCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGCT 57616 Query 179759 CAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTAT 179818 ||||| || ||||||||||| ||||||||| || | || | || ||||| ||||||| Sbjct 57615 GAACCCTTTTCATATGATGGGGGTTGCTGGTGTATTGGGCGCCGCTCTGCTATGTGCTAT 57556 Query 179819 CCATGGAGTTACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAA 179878 ||||| | ||| ||||| ||||| || | ||||||||| || |||||||| || Sbjct 57555 TCATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGGGCAAATACATTCCG 57496 Query 179879 GGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTG 179938 ||| ||| | | || || | || || |||||||| |||||||| || ||||| || || Sbjct 57495 GGCTTTTAACCCAACCCAAGCTGAGGAAACTTATTCAATGGTCACCGCTAACCGTTTTTG 57436 Query 179939 GTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTT 179998 ||| || ||||| || |||| ||||| || || || ||| | ||||| || ||||| || Sbjct 57435 GTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATT 57376 Query 179999 TGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCT 180058 ||| || || | ||| |||||| || |||| | | ||||| || | ||||| Sbjct 57375 TGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACCT 57316 Query 180059 TCGTGCTTACGATTTCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAGTTTGAGAC 180118 ||||| || || ||||| ||||| ||| | ||||| |||||||| || |||||||| Sbjct 57315 ACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCCGAAGATCCTGAATTTGAGAC 57256 Query 180119 CTTCTACACCAAGAACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGCACCAGTTGA 180178 ||||||||||| || ||||| | || ||||| | ||||| ||| |||| | || Sbjct 57255 TTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGA 57196 Query 180179 TCAACCACATGAGTCATTCGTATTCCCAGAAGAAGTTCTGCC 180220 ||| || ||||| | ||||||| || || ||||| || Sbjct 57195 TCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 57154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603678584073600