Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2381 219 6e-52 seq33024 185 1e-41 seq80314 140 4e-28 seq100015 114 2e-20 seq6823 95.1 2e-14 >seq2381 Length=21385 Score = 219 bits (242), Expect = 6e-52 Identities = 605/915 (66%), Gaps = 23/915 (3%) Strand=Plus/Plus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 || || || || ||||| || |||||||| |||||||| || |||| || ||||| Sbjct 13682 TTCTGATACTCCCCAACCCGCTTCTCGAAGAAATTAGTCTTCCCTTGCAGCGATATTAAC 13741 Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445 ||||| |||||||||| || || |||| || || |||| || | || | Sbjct 13742 TCCATCCAATCAAACGGGTTCGTAACATTGTAAACCTTCCCGCATCCCAACGCACCAAGC 13801 Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505 || ||||| |||||||| || || || |||||| || | ||||| || | | Sbjct 13802 AACCTATCCGCAACAAACTCAATATACTGACTCATCAACTCCCCGTTCATCCCAACCAAC 13861 Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565 | |||| || || | |||||| | ||||| || || ||||| | ||||| Sbjct 13862 GCACACGGTAACGCGTCACAAACAAACTCCCTCTCGATCTCCACCGCCTCAGAAATTATA 13921 Query 39566 GATGTTACTACCTCATCACTCGGTGGATGC---AATAAATGTTTAAACATTAAGCAGGCG 39622 | | ||| ||| || |||| | | |||| | | |||| | || ||| Sbjct 13922 CTTTTGACTCTCTCCTCGCTCGTCTTCTTCTTCAATAGAGAGTATAACA---AACATGCG 13978 Query 39623 AAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGC 39682 || || ||||| || || || |||| | |||||| |||||||| || || ||||||||| Sbjct 13979 AAATCGCAATGAAGCCCTTCGTCTCGAGAAATTAACTCGTTAGAGAAGGTTAGTCCAGGC 14038 Query 39683 ATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAAGAAGATGCC 39741 |||| |||||||||||| ||||| ||||| || ||| ||| |||||| ||||| || || Sbjct 14039 ATTAAACCACGCTTTTTCAGCCAGAATATAGC-GCAGAAGCTTCCAGAGAAGAATATCCC 14097 Query 39742 TTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATC---ATTATGTATCCA 39798 ||| || |||||||||| | || |||| | ||| | || | |||||||| Sbjct 14098 TTCAACACAAGCAAATGCAATTATTCGCTCTGC-AAAC--GATTCCGAACCGTGTATCCA 14154 Query 39799 -CTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 39857 | | | ||||||||||| || ||| ||| || || ||||| | |||| ||||| Sbjct 14155 GCGTAAG-GCCCAATCAGCCTTACGCTTGACAGTCGGAATCGTTTCCAGAGCACGAAAGA 14213 Query 39858 GATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTG 39917 || |||||| | ||||| || ||| ||||| | | ||| ||||||||| | Sbjct 14214 GACTCGACTTTTCAGCGGAATCTTGAATATAGGTATCAAGAAGGAGAGAATACATTTCGG 14273 Query 39918 AATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTA 39977 |||| |||||||| || || || || || |||||||| | ||||||| | ||| | Sbjct 14274 AATGAATGTTTTCGATAGCAATTTGGAAACCGTAAAATGCACGCGCTTCAGGGAGTTGGA 14333 Query 39978 CCTC--TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAA 40035 ||| ||| || | || | |||||| || || || ||| || ||||| Sbjct 14334 TCTCCTTGA--TGAAGCGGGAAGCGAGATTTTCGAGAACAATACCGTCAGAGGCAGCAAA 14391 Query 40036 AAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTAT---TCCAGTC 40092 || || | || || | || || | |||||||| || | | | | ||||| Sbjct 14392 GAAGGCGAGCACGTGAGTGATGAAGTGGCGCTCATCGGGCGTGAGTGTGTCGGACCAGTG 14451 Query 40093 ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTT 40152 || ||| |||| || |||||||| || ||||| || || || || || || || Sbjct 14452 TCGGAGATCGGAGGATAGGTCAACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTTTCTT 14511 Query 40153 GTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTTTT 40212 |||||| | ||| || | | | |||| ||||| || ||| || | | || |||| Sbjct 14512 GTACATTTCCCAGATTTGAGGGTATTTGATTGGGAACATACAGAACCGGTCCGGGTTTTC 14571 Query 40213 TGCAAGGATGGGTTC 40227 || |||| |||||| Sbjct 14572 GGCGAGGAGGGGTTC 14586 >seq33024 Length=3557 Score = 185 bits (204), Expect = 1e-41 Identities = 591/909 (65%), Gaps = 11/909 (1%) Strand=Plus/Plus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 || || || || ||||| || || |||||||||||||| || || | ||| || || | Sbjct 1029 TTCTGATACTCCCCAACCCGCTTTTCGAAAAAATTAGTCTTTCCCTGCAAAGAAATCAAT 1088 Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445 ||||| ||||||||||||| | | || ||| || ||||| | | | Sbjct 1089 TCCATCCAATCAAACGGATTCGAAACTCCGTAAACTTTCCCAATCCCTAAAGCACCCAAC 1148 Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGA-- 39503 || ||||| ||||||||||| || || |||| | || | |||||| || | | Sbjct 1149 AACCTATCAGCAACAAATTCAATATACTGACTCATTAACTCTCCATTCATCCCAACCAAC 1208 Query 39504 GTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTA 39563 | || || || || || | |||||| | ||||| || || ||||||| | | Sbjct 1209 GCGCAA--GGCAGCGCGTCACAAACAAACTCCCTCTCGATTTCCACCGCCTCTGAAACAA 1266 Query 39564 TCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGA 39623 || | || ||| ||||||| || || | ||| || ||||||| Sbjct 1267 TCCCCTTCACGCGCTCCTCACTCGCCTTATTGTTCAACAGCGAGTACAACAAACAGGCGA 1326 Query 39624 AGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCA 39683 | ||||| |||| ||||| |||| | ||| || ||||| || || || || || |||| Sbjct 1327 AATCACAGTGTAACCCCTCGTCTCGAGAAATCAACTCGTTCGAGAAGGTAAGCCCCGGCA 1386 Query 39684 TTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAAGAAGATGCCT 39742 ||| || || || |||||||||||||| || ||| ||| |||||| ||||| || ||| Sbjct 1387 TTAATCCTCGTTTCTTGAGCCAAAATATCGC-GCAGAAGCTTCCAGAGAAGAATATCCCT 1445 Query 39743 TCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTATCCACTTC 39802 || || || || || |||| || ||| || |||| | | ||||| | Sbjct 1446 TCAACACAAGCGAAAGCGACAATTCGCTCAGCGAAACTCTCCCCGCCGTCGATCCAGCGC 1505 Query 39803 TGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAA 39862 ||||||||||| || ||| ||| || || || || | |||| || | | Sbjct 1506 AAGGCCCAATCAGCCTTGCGCTTGACAGCGGGGATAGTCTCAACAGCACGGAATAAACCC 1565 Query 39863 TGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGG 39922 |||||| || ||| |||| || || || | ||| | |||||||| |||||| Sbjct 1566 GATTTTTCCTCCGAATCCTTAATGTAAGTCTCCAATAATAAGGAGTACATTTCGGAATGG 1625 Query 39923 ATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCT-C 39981 || ||||| || || || ||||| |||||||| ||| ||||||| || ||| || | | Sbjct 1626 ATATTTTCGATAGCGATTTGAAACCCGTAAAATGCTCTCGCTTCAGGAAGTTGAACTTCC 1685 Query 39982 TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGC 40041 | | ||| | || | ||| || ||| || || ||| ||||| || || || Sbjct 1686 TTCATGAAA-CGACAAGCGAGATTCTCCAGCACAATACCGTCAGATGCGGCGAAGAAGGC 1744 Query 40042 CAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTAT---TCCAGTCATTGAT 40098 | || || | || |||| |||||||| |||| | | ||||| | | Sbjct 1745 GAGCACGTGAGTGATGAAATGACGTTCATCGGACGTCAGAGTGTCGGACCAGTGACGTAA 1804 Query 40099 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACAT 40158 ||| |||| ||| ||||||||||| ||||| || || || || || ||||||||||| Sbjct 1805 ATCGGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAAGCTTCGGCTTTTTTGTACAT 1864 Query 40159 GTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAG 40218 | ||| || | | ||| ||||| || || |||| || ||| ||| || || Sbjct 1865 TTCCCAGATTTGGGGGAATTTGATTGGGAACATGCAGAATCGATCTGGGTTTGGGGCGAG 1924 Query 40219 GATGGGTTC 40227 | |||||| Sbjct 1925 TAAGGGTTC 1933 >seq80314 Length=1716 Score = 140 bits (154), Expect = 4e-28 Identities = 362/543 (67%), Gaps = 18/543 (3%) Strand=Plus/Minus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 || || || || |||| ||||||||||| |||||||| || |||| ||| ||||| Sbjct 1261 TTCTGATACTCCCCAATCCGTTTCTCGAAGAAATTAGTCTTCCCTTGCAACGATATTAAC 1202 Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445 ||||| |||||||||| || || |||| || || |||| || | || | Sbjct 1201 TCCATCCAATCAAACGGGTTCGTGACATTGTAAACCTTCCCGCATCCCAACGCACCAAGC 1142 Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505 || ||||| |||||||| || || || |||||| || | ||||| || | | Sbjct 1141 AACCTATCCGCAACAAACTCAATATACTGACTCATCAGCTCCCCGTTCATCCCAACCAAC 1082 Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565 | |||| || || | |||||| | ||||| || || ||||| | ||||| Sbjct 1081 GCACACGGTAACGCGTCACAAACAAACTCCCTCTCGATCTCCACCGCCTCAGAAATTATA 1022 Query 39566 GATGTTACTACCTCATCACTCGGTGGA-------TGCAATAAATGTTTAAACATTAAGCA 39618 |||| |||| || |||| ||| | ||| | | | |||| | || Sbjct 1021 CTCTTTAC--CCTC-TC-CTCGCTGGTCTTCTTCTTCAACAGAGAGTATAACA---AACA 969 Query 39619 GGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCC 39678 ||||| || ||||| || || || |||| | |||||| || ||||| || || ||||| Sbjct 968 CGCGAAATCGCAATGAAGCCCTTCGTCTCGAGAAATTAACTCATTAGAGAAGGTTAGTCC 909 Query 39679 AGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGAT 39738 |||||||| ||| |||||||| ||||| ||||| ||| ||| |||||| ||||| | Sbjct 908 AGGCATTAAACCTCGCTTTTTCAGCCAGAATATAGCACATAAACTTCCAGAGAAGAATAC 849 Query 39739 GCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA-TTATGTATCC 39797 ||||| || |||||||||| | || |||| | ||| ||| | | |||| Sbjct 848 TCCTTCAACACAAGCAAATGCAATTATTCGCTCTGC-AAACAATTATGACCCGTCAATCC 790 Query 39798 -ACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAG 39856 || | | ||||||||||| || ||| ||| || || ||||||| |||| ||| Sbjct 789 AACGTAAG-GCCCAATCAGCCTTACGCTTGACAGCCGGAATCGTTTCTACAGCACGAAAC 731 Query 39857 AGA 39859 ||| Sbjct 730 AGA 728 >seq100015 Length=1511 Score = 114 bits (126), Expect = 2e-20 Identities = 303/458 (66%), Gaps = 6/458 (1%) Strand=Plus/Plus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 || || || || ||||| || || |||||||||||||| || || | ||| || || | Sbjct 937 TTCTGATACTCCCCAACCCGCTTTTCGAAAAAATTAGTCTTCCCCTGCAACGAAATCAAT 996 Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445 ||||| ||||||||||||| | | || ||| || ||||| | | | Sbjct 997 TCCATCCAATCAAACGGATTCGAAACTCCGTAAACTTTCCCAATCCCTAAAGCACCCAAC 1056 Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGA-- 39503 || ||||| |||||||| || || || |||||| || | |||||| || | | Sbjct 1057 AACCTATCAGCAACAAACTCAATATACTGACTCATCAACTCTCCATTCATCCCAACCAAC 1116 Query 39504 GTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTA 39563 | || || || || || | |||||| | || || || || ||||| | | | Sbjct 1117 GCGCAA--GGCAGCGCGTCACAAACAAACTCCCTCTCAATTTCCACTGCCTCCGAAACAA 1174 Query 39564 TCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGA 39623 || | || ||| ||||||| || || | ||| || ||||||| Sbjct 1175 TCCCCTTCACGCGCTCCTCACTCGCCTTATTGTTCAACAGCGAGTACAACAAACAGGCGA 1234 Query 39624 AGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCA 39683 ||||||| |||| ||||| |||| | ||| || ||||| || || || || || |||| Sbjct 1235 AGTCACAGTGTAATCCCTCGTCTCGAGAAATCAACTCGTTCGAGAAGGTAAGCCCTGGCA 1294 Query 39684 TTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAAGAAGATGCCT 39742 ||| || || || |||||||||||||| || ||| ||| |||||| ||||| || ||| Sbjct 1295 TTAACCCTCGTTTCTTGAGCCAAAATATCGC-GCAGAAGCTTCCAGAGAAGAATATCCCT 1353 Query 39743 TCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACT 39780 || || || || || |||| || ||| || |||| Sbjct 1354 TCAACACAAGCGAAAGCGACAATTCGCTCAGCGAAACT 1391 >seq6823 Length=41093 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| || || | || | || || | |||| | || || ||||| || ||||||| Sbjct 37031 TCCTCCTTGGTCAACATAACGTGCGGTATCATTAAATACCCTGAGCATTGGTGTAATACC 37090 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| |||||||| || |||||||| ||| | || || ||||| | ||| Sbjct 37091 ATTAGATAATCCATTTGTGCCTCGGATATAACTGCCTGTGGCACGGATATTGTGGACAGA 37150 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| || || || || ||| || | ||||| |||||||||||||| || Sbjct 37151 AACACCAATACCACCAGCAGATTTGCTTATAACGGCACACTCCTTCAATGTGTCATAGAT 37210 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 || || |||||||| ||| ||||| || ||| || || || Sbjct 37211 TCCTTCAATGCTATCCTCTTTCATGCAAATAAGGAAGCAACT 37252 Score = 93.3 bits (102), Expect = 6e-14 Identities = 172/249 (69%), Gaps = 10/249 (4%) Strand=Plus/Plus Query 68955 ATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTA 69014 ||||||||||||||| ||||||| |||||| || ||| || | | ||| ||| Sbjct 35550 ATATGTTTCATAAGGGCCTTCCTTGGCAGCTAATTTGCAAGATGTTTTGAGAGCATGGTA 35609 Query 69015 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATA 69074 ||||||||| || || || | ||| || | | ||| || || | ||| || || Sbjct 35610 ATAAATTGTCTCAAATATGTCCTTGTTCAACTGTTGGGCCTCAGGTGAATCAAAAGGC-- 35667 Query 69075 ATG--TAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGT 69132 ||| || | ||||| | |||||| | || |||| ||||||||||| |||| |||| Sbjct 35668 ATGCCTAGTAAGATAAAGGTATCTGCTAGGCCTTGAATTCCAATACCGATTGGTCGATGT 35727 Query 69133 CTCTTATTTGA---ACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 69189 ||| | ||||| ||| ||| ||| || || || |||| | ||| || ||||| Sbjct 35728 CTCATGTTTGATCTTCTTGCAGTTTC---AACTGGGTAGAAATTGACATCAATTATTTTG 35784 Query 69190 TTAAGATTT 69198 || |||||| Sbjct 35785 TTCAGATTT 35793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 684266605300800