Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq33024 140 3e-28 seq2381 125 6e-24 seq80314 95.1 1e-14 seq100015 91.5 1e-13 >seq33024 Length=3557 Score = 140 bits (154), Expect = 3e-28 Identities = 389/587 (66%), Gaps = 11/587 (2%) Strand=Plus/Minus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| ||||| ||| | | || ||| |||||||||||||||| | || || || | Sbjct 1896 TGTTCCCAATCAAATTCCCCCAAATCTGGGAAATGTACAAAAAAGCCGAAGCTTCTTTCT 1837 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTG-CATTAAAACCA 43825 |||| || |||||||| ||||| || || ||| || ||| | || | || Sbjct 1836 GGACTGCTGAAGAAGTCGATTTATCTTCCGATTTACGTCACTGGTCCGACACTCTGACGT 1777 Query 43826 C--AAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAG 43883 | | ||| ||||| || || || | || || || || || ||||| || | Sbjct 1776 CCGATGAACGTCATTTCATCACTCACGTGCTCGCCTTCTTCGCCGCATCTGACGGTATTG 1717 Query 43884 TCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTT 43943 | || ||| | | | |||| || | | ||||||||| | || ||||| || | Sbjct 1716 TGCTGGAGAATCTCGCTTGTCGTTTCATGAAGGAAGTTCAACTTCCTGAAGCGAGAGCAT 1657 Query 43944 TTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAG 44003 |||| ||||||||||| || || |||||||| ||||| ||||||||| ||| | || | Sbjct 1656 TTTACGGGTTTCAAATCGCTATCGAAAATATCCATTCCGAAATGTACTC-CTTATTATTG 1598 Query 44004 -ATACGTACATCAAAGATGGGCACGAGAAGCATCGA--TTGTTTAATGCGATAGAAACAG 44060 | || ||||| || ||| | | || || |||| || || ||| | || || Sbjct 1597 GAGACTTACATTAAGGATTCGGAGGAAAA--ATCGGGTTTATTCCGTGCTGTTGAGACTA 1540 Query 44061 TACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTT 44120 | || || | || | || || || |||||| | ||||| | || || Sbjct 1539 TCCCCGCTGTCAAGCGCAAGGCTGATTGGGCCTTGCGCTGGATCGACGGCGGGGAGAGTT 1480 Query 44121 TTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTT-T 44179 | | || ||| ||||||| || || ||| ||||| || ||||| || ||| || | Sbjct 1479 TCGCTGAGCGAATTGTCGCTTTCGCTTGTGTTGAAGGGATATTCTTCTCTGGAAGCTTCT 1420 Query 44180 GCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAG 44239 ||| | ||||||||| | ||||||||||| || ||||| ||| | || || || || ||| Sbjct 1419 GCG-CGATATTTTGGCTCAAGAAACGAGGATTAATGCCGGGGCTTACCTTCTCGAACGAG 1361 Query 44240 TTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTT 44286 || || ||| || || || ||||| || ||||| || || ||||| Sbjct 1360 TTGATTTCTCGAGACGAGGGGTTACACTGTGATTTCGCCTGTTTGTT 1314 >seq2381 Length=21385 Score = 125 bits (138), Expect = 6e-24 Identities = 388/591 (66%), Gaps = 17/591 (3%) Strand=Plus/Minus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| ||||| |||| | | | || ||| |||||||||| ||||| | || || || | Sbjct 14549 TGTTCCCAATCAAATACCCTCAAATCTGGGAAATGTACAAGAAAGCCGAAGCATCCTTCT 14490 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTG---CATTAAAAC 43823 |||| || ||||||||||| | | || | ||| ||| | || | | | Sbjct 14489 GGACCGCCGAAGAAGTTGACCTATCCTCCGATCTCCGACACTGGTCCGACACACTCACGC 14430 Query 43824 CACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAG 43883 | | || || || || || || | || || |||||||| ||||| || | Sbjct 14429 CCGATGAGCGCCACTTCATCACTCACGTGCTCGCCTTCTTTGCTGCCTCTGACGGTATTG 14370 Query 43884 TCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTC-AATTACCAGAAGCACGATGT 43942 | |||||| | | | || || |||| || || || | || ||||| || Sbjct 14369 TTCTCGAAAATCTCGCTTCCCGCTTCAT-CAAGGAGATCCAACTCCCTGAAGCGCGTGCA 14311 Query 43943 TTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATA 44002 ||||| || || |||||||| || ||||| |||||||| |||||||| ||| || | Sbjct 14310 TTTTACGGTTTCCAAATTGCTATCGAAAACATTCATTCCGAAATGTATTCTCTCCTTCTT 14251 Query 44003 GATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGT--TTAATGCGATAGAAACAG 44060 ||||| || || ||||| || ||| |||| | | || ||| | ||||| Sbjct 14250 GATACCTATATTCAAGATTCCGCTGAAAAG--TCGAGTCTCTTTCGTGCTCTGGAAACGA 14193 Query 44061 TACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAA---TTCAAATGATT 44117 | || | | || | ||| || || |||||| | |||||| | ||| || | Sbjct 14192 TTCCGACTGTCAAGCGTAAGGCTGATTGGGCCTTACGCTGGATACACGGTTCG---GAAT 14136 Query 44118 CTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGT 44177 | |||| ||| ||| | | || ||||| ||| ||||| || ||||| || ||| | Sbjct 14135 CGTTTGCAGAGCGAATAATTGCATTTGCTTGTGTTGAAGGGATATTCTTCTCTGGAAGCT 14076 Query 44178 T-TGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAAT 44236 | |||| | ||||| ||| | || || || ||||| |||||||| | || || || || Sbjct 14075 TCTGCG-CTATATTCTGGCTGAAAAAGCGTGGTTTAATGCCTGGACTAACCTTCTCTAAC 14017 Query 44237 GAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTA 44287 |||||||| ||| || ||||| | ||||||||||| || || |||||| Sbjct 14016 GAGTTAATTTCTCGAGACGAAGGGCTTCATTGCGATTTCGCATGTTTGTTA 13966 >seq80314 Length=1716 Score = 95.1 bits (104), Expect = 1e-14 Identities = 124/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 44120 TTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTT 44179 |||| ||| ||| | | || ||||| ||| ||||| | ||||| || ||| |||| Sbjct 810 TTTGCAGAGCGAATAATTGCATTTGCTTGTGTTGAAGGAGTATTCTTCTCTGGAA-GTTT 868 Query 44180 GCG-GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGA 44238 | || ||||| ||| | || || |||||||| |||||||| | || || || ||||| Sbjct 869 ATGTGCTATATTCTGGCTGAAAAAGCGAGGTTTAATGCCTGGACTAACCTTCTCTAATGA 928 Query 44239 GTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTA 44287 |||||| ||| || ||||| | ||||||||||| || || |||||| Sbjct 929 GTTAATTTCTCGAGACGAAGGGCTTCATTGCGATTTCGCGTGTTTGTTA 977 >seq100015 Length=1511 Score = 91.5 bits (100), Expect = 1e-13 Identities = 119/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 44126 GAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTT-TGCGGC 44184 || ||| ||||||| || || ||| ||||| || ||||| || ||| || |||| | Sbjct 1382 GAGCGAATTGTCGCTTTCGCTTGTGTTGAAGGGATATTCTTCTCTGGAAGCTTCTGCG-C 1324 Query 44185 CATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAAT 44244 ||||||||| | ||||||||||| || ||||| ||| | || || || || ||||| || Sbjct 1323 GATATTTTGGCTCAAGAAACGAGGGTTAATGCCAGGGCTTACCTTCTCGAACGAGTTGAT 1264 Query 44245 AAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTT 44286 ||| || || || ||||| || || || || || ||||| Sbjct 1263 TTCTCGAGACGAGGGATTACACTGTGACTTCGCCTGTTTGTT 1222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395965405858600