Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq11074 125 6e-24 seq8115 122 7e-23 seq2831 113 4e-20 seq112514 104 2e-17 seq9218 95.1 1e-14 seq12130 89.7 4e-13 seq9871 86.0 5e-12 seq51823 84.2 2e-11 >seq11074 Length=8391 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG-CT 27079 || ||||| | || || || | ||| | ||||| ||||| || |||||||| ||| || Sbjct 707 CCGCCGCGAAGACGTAAAACAAGATGAAGAGTAGATTCTTTCTGGATATTGTAATCGGCT 648 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | || || | ||||| || |||||||| || | || ||||| |||||||| || || Sbjct 647 AAAGTA-CGACCATCTTCAAGTTGTTTACCAGCAAAGATAAGACGTTGTTGATCAGGTGG 589 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || ||||| || ||||||| |||| | | || | ||||||| | |||||| Sbjct 588 GATGCCTTCTTTGTCTTGGATCTTGGTTTTGACATTGTCGATTGTGTCTGATGATTCAAC 529 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||||| ||||| | |||||| || || |||||||| || || ||||| Sbjct 528 TTCTAGGGTTATTGTTTTGCCAGTTAGGGTTTTCACGAATATCTGCAT 481 >seq8115 Length=10241 Score = 122 bits (134), Expect = 7e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | | || |||||||||| ||||| ||| Sbjct 7299 GTCGATTCCTTCTGGATGTTGTAGTCGGCTAGGGTACGGCCGTCTTCGAGTTGTTTTCCG 7358 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | |||||||||||||| || || || | || ||||| || ||||||| |||| Sbjct 7359 GCGAAGATGAGACGCTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGGATCTTGGTTTTG 7418 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||||| || |||||| || || || || | ||| || || || ||| Sbjct 7419 ACATTGTCGATTGTGTCTGAGGATTCAACCTCAAGGGTGATTGTTTTCCCAGTTAGGGTT 7478 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 7479 TTCACGAAGATCTGCAT 7495 >seq2831 Length=23904 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || ||||| || ||||||||| | | |||| ||||||| ||||||||||| Sbjct 5176 GTAGACTCCTTTTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCTTCTAGCTGTTTACCA 5117 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || ||||| || || || || || | || || ||||| ||||||| |||| Sbjct 5116 GCGAAGATAAGACGTTGCTGGTCTGGGGGGATCCCTTCCTTATCTTGGATCTTGGTTTTG 5057 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | || || || ||||| || | ||||| || || ||| Sbjct 5056 ACATTGTCGATTGTGTCGGAGCTCTCGACCTCGAGAGTGATTGTCTTGCCAGTTAGGGTT 4997 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||||||||| Sbjct 4996 TTCACGAAGATTTGCAT 4980 >seq112514 Length=1387 Score = 104 bits (114), Expect = 2e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 27058 CTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAA 27117 |||||||||| ||||||||| | | || | ||||| | ||| ||||||||| ||| Sbjct 423 CTTTTTGAATGTTGTAGTCGGCAAGCGTACGACCATCTTCCAACTGCTTACCGGCGAAAA 482 Query 27118 TGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTT 27177 | | ||| ||||| ||||| || | ||| |||||||| ||||| |||| | | | Sbjct 483 TCAAACGTTGTTGGTCCGGAGGAATACCTTCTTTATCTTGAATCTTAGTTTTGACATTAT 542 Query 27178 CTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAA 27237 ||| ||| || | | ||||||||||| || || | ||| || || | |||||||| | Sbjct 543 CTATAGTATCACTAGATTCAACTTCTAAGGTAATGGTTTTACCAGTTAAGGTTTTCACGA 602 Query 27238 AGATTTGCAT 27247 | || ||||| Sbjct 603 ATATCTGCAT 612 >seq9218 Length=18002 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 |||||||| | || || || || ||||||||||| || ||| | | | ||| ||||||| Sbjct 14677 ACCAAATGGAGAGTCGACTCCTTCTGAATATTGTAATCAGCT-AGGGTACGCCCGTCTTC 14735 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 | ||||| ||||| | || | | ||| ||||| || || | || |||||||| Sbjct 14736 CAATTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAGGAATCCCTTCTTTATCCTG 14795 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 |||||| | |||| | || | ||||| | | ||| ||||| || || |||| ||| Sbjct 14796 GATCTTTGTCTTCACATTGTCAATGGTGTCCGAGCTTTCGACTTCCAGGGTAATAGTTTT 14855 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || ||||| || || || || |||||| Sbjct 14856 CCCAGTTAGAGTCTTGACGAAAATCTGCATA 14886 >seq12130 Length=7920 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| |||||||| | || || || || || ||||||||||| | | |||| | Sbjct 5763 CGCAACACCAAATGGAGAGTTGACTCCTTCTGGATATTGTAGTCAGCGAGGGTGCGACCA 5822 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||||||||| || || ||| |||| || | || ||||| || || | ||||| || Sbjct 5823 TCTTCGAGCTGCTTTCCAGCGAAAATAAGCCTTTGCTGATCTGGGGGAATTCCCTCCTTG 5882 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || |||||| | || | | || | ||||| || || || || | ||| || Sbjct 5883 TCTTGGATCTTAGTCTTGACATTGTCAATTGTGTCGCTGCTCTCGACCTCCAAAGTGATG 5942 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 | ||||| || || || || ||||| ||||||||| || Sbjct 5943 GTCTTGCCAGTGAGGGTCTTGACAAATATTTGCATACCT 5981 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 ||||| || | || | ||||| || | || || || ||||| || |||||||| || Sbjct 5979 CCTCCACGGAGACGGAGGACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCTGCG 6038 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 ||| || |||||||||| |||||||| ||| | || | ||| || || || || || Sbjct 6039 AGAGTTCGGC-CGTCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGCTGGTCTGGGGG 6097 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | |||||||| || |||||| |||| | | || | ||||| | ||||| Sbjct 6098 AATCCCCTCTTTGTCTTGAATCTTGGTTTTTACATTGTCGATTGTGTCGGAACTCTCAAC 6157 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || | || || || ||||| || || ||||||||||| Sbjct 6158 CTCGAGAGTGATTGTCTTTCCGGTAAGAGTCTTAACGAAGATTTGCAT 6205 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| || | || | ||||| || | || || || ||||| || ||||||||| Sbjct 1191 TGCCTCCACGGAGACGGAGGACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGG 1250 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | || | ||||| || |||||||| || | || | ||| || || || || | Sbjct 1251 CGAGGGTTCGGCCATCTTCAAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGGG 1310 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | |||||||| || ||||| |||| | | || | ||||| | | |||| Sbjct 1311 GAATTCCCTCTTTGTCTTGAATCTTTGTTTTGACATTATCGATTGTGTCGGAGCTCTCAA 1370 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || ||||| || | || || |||| ||| || || ||||||||||| Sbjct 1371 CCTCGAGAGTGATGGTCTTACCGGTCAAAGTCTTAACGAAGATTTGCAT 1419 >seq9871 Length=9033 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || ||||| || ||||||||| | | || |||||||||| |||||||| Sbjct 951 GTGGACTCCTTTTGGATGTTGTAGTCGGCGAGAGTTCGGCCGTCTTCGAGTTGTTTACCA 1010 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || | ||| || || || || || | || || ||||| ||| ||| |||| Sbjct 1011 GCGAAGATCAAACGTTGCTGGTCTGGGGGAATCCCTTCCTTATCTTGGATTTTGGTTTTG 1070 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | || || || ||||| || | || || |||||||| Sbjct 1071 ACATTGTCGATTGTGTCGGAGCTCTCGACCTCGAGAGTAATTGTCTTTCCGGTCAGAGTC 1130 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||||||||| Sbjct 1131 TTAACGAAGATTTGCAT 1147 >seq51823 Length=2487 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| |||||||| | || || || |||||||| ||||||||| | | ||||| || Sbjct 1787 CGCAACACCAAATGGAGAGTTGACTCCTTTTGAATGTTGTAGTCGGCAAGGGTGCGCCCG 1728 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || || ||||| || || || | || | | ||| || || || || | || || || Sbjct 1727 TCCTCAAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGAATTCCTTCCTTG 1668 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||| ||| | || | | || | || || | ||||| || || || ||| Sbjct 1667 TCCTGGATTTTGGTCTTGACATTGTCAATGGTATCGGAACTCTCAACCTCGAGGGTGATA 1608 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||||| |||| || || ||||||||||||||| Sbjct 1607 GTCTTGCCGGTCAAGGTCTTGACAAAGATTTGCATA 1572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423340752584640