Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq407 161 1e-34 seq5880 140 4e-28 seq108 96.9 4e-15 seq6823 91.5 2e-13 seq2381 86.0 8e-12 >seq407 Length=47313 Score = 161 bits (178), Expect = 1e-34 Identities = 257/367 (70%), Gaps = 4/367 (1%) Strand=Plus/Minus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || |||||||| || || | || || || |||||| || || | | ||||| || Sbjct 36713 CGGTCAAAACGTCCTGGCCTCAGAAGAGCTGAATCAAGAATGTCAGCTCTGTTAGTTGCA 36654 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 ||||| || | | |||||| | | ||||||||||||||||| ||||| | |||||| Sbjct 36653 GCAATTACTATTACGCCAGTGTTACCCTCAAAGCCATCCATCTCAGTGAGAAGCTGATTA 36594 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCCACC 11629 | ||||||||| || |||||||| || | | |||| || | ||| | || || Sbjct 36593 AGTGTTTGTTCCCTTTCATCATTCCCTCCCCCAATTCCAGTACCTCTTTGTCTCCCAACA 36534 Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689 |||||||| ||||||| || ||||| ||||| |||||| || ||| ||||||| Sbjct 36533 GCATCAATTTCATCAACAAAAACAATGCATGGAGCATTTTCTTTCGCCTTTTTAAAGAGA 36474 Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCAC 11749 || || || | |||||||| |||||||||||||| || || | || | || | Sbjct 36473 TCACGCACTCGAGAAGCACCCACGCCAACAAACATCTCAACGAATTCTGAACCCGA--AA 36416 Query 11750 TG--GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCG 11807 || || ||||| ||| || ||| || || || || || || ||||||||||| | Sbjct 36415 TGGAGAAAAATGGCACACCTGCTTCCCCTGCAATAGCCTTTGCCAGCAGGGTCTTTCCTG 36356 Query 11808 TACCTGG 11814 | ||||| Sbjct 36355 TCCCTGG 36349 >seq5880 Length=12336 Score = 140 bits (154), Expect = 4e-28 Identities = 264/385 (69%), Gaps = 10/385 (3%) Strand=Plus/Plus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || ||||| || || || | || || || |||||| || || | | ||||| || Sbjct 7760 CGGTCAAATCGTCCTGGCCTCAGCAGAGCAGAATCAAGAATGTCAGCTCTGTTAGTAGCA 7819 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 ||||| || | ||||| || | | ||||| ||||||||||| ||||| | ||||| Sbjct 7820 GCAATTACAATGATGCCGGTATTACCCTCAAAACCATCCATCTCCGTGAGAAGCTGATTC 7879 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA---CCAGCACTGCGTTGCTTGCCC 11626 | || ||||| || |||||||| || |||| |||| || | ||| | ||| Sbjct 7880 AACGTCTGTTCCCTTTCATCATTCCCTCC---ACCAATTCCAGTACCTCTCTGCCTCCCC 7936 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || ||||| || ||||||| || ||||||||||| |||||| || ||| ||| Sbjct 7937 ACTGCATCTATTTCATCAACAAAAACAATACATGGAGCATTTTCTTTTGCCTTTTTAAAT 7996 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG 11746 ||||| || || | ||||||||||||||||||||||| ||||| | | |||| Sbjct 7997 AGATCACGCACTCGAGATGCACCCACACCAACAAACATCTCTACAAATTCGGAACCAGA- 8055 Query 11747 CACTG--GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTC 11804 | || || ||||| ||| | ||| || || || || || || | ||||||| Sbjct 8056 -AATGGAGAAAAATGGAACACCAGCTTCTCCAGCAATAGCCTTTGCAAGCAATGTCTTTC 8114 Query 11805 CCGTACCTGGCTTACCCGCGAGAAG 11829 | |||||||| |||| | ||||| Sbjct 8115 CGGTACCTGGAGGACCCACAAGAAG 8139 >seq108 Length=40423 Score = 96.9 bits (106), Expect = 4e-15 Identities = 250/378 (66%), Gaps = 26/378 (7%) Strand=Plus/Minus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 |||||||| | |||||| | | | ||| |||||| | ||| | |||||| || Sbjct 19331 CGATCAAACCTACCCGGTCTCAACAAGGCTGAATCAAGAACATCGGGCCTATTAGTAGCA 19272 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAG---CCATCCATCTCGGTGAGTAATTGA 11566 || | |||||| || | ||| || || ||||||||||| || | || ||| Sbjct 19271 GCCAA---CACAATAACACCCGAATTCCCAGAGAACCCATCCATCTCAGTCAACAACTGA 19215 Query 11567 TTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA-CCAGCACTG-----CGTTGC 11620 ||||| || || || |||||||||||| | |||| ||| | ||| | ||| Sbjct 19214 TTAATAGTCTGCTCCCTCTCATCATTTCC------ACCACCCATCCCTGCCCCTCTCTGC 19161 Query 11621 TTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGG----TTGATTTTCGCGGGC 11676 | || |||||||| ||||||||||| || ||||| || || ||| | || || Sbjct 19160 CTCCCAACCGCATCTATCTCATCAATAAACACAATGCAAGGCGCCTTGCTCTT----TGC 19105 Query 11677 GATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTT 11736 | ||||| | || | ||| || | || || || || ||||||| ||| ||||| | Sbjct 19104 CTTCTCAAACAAGTCCCTAACTCTACTTGCCCCAACCCCGACAAACAACTCTACAAACTC 19045 Query 11737 TGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAG 11796 | || | || || ||| || || || ||||| |||| ||||| || || | Sbjct 19044 AGAAGCTGCACATGAGAAGAACGGTACTCCTGCCTCACCAGCGACGGCTCTTGCCAGCAA 18985 Query 11797 GGTCTTTCCCGTACCTGG 11814 || |||||||||||||| Sbjct 18984 CGTTTTTCCCGTACCTGG 18967 >seq6823 Length=41093 Score = 91.5 bits (100), Expect = 2e-13 Identities = 160/228 (70%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TG 111999 || || ||||| || ||||| ||||||||||| |||| || ||| | ||| |||| || Sbjct 37514 TGAGGCCTTGGCGTGCCAGCGTTGAAGAGGGTCGGTGAAGCATGAGTAAAC-CACCTCTG 37572 Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 ||||| | | ||| || | | | ||||||| || ||| ||||||||| | ||| Sbjct 37573 AGACATATAATGGTAAGTTGAAATGGCTGAATCAACATCCTCCTTGTGGATGCCTACTGC 37632 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGAT 112118 || | ||| | ||||| ||||| | |||| | | |||| || || | | || | Sbjct 37633 AACTCTCATTATCATGTGTTGTGGTCTCTCCACAACCTTCCCATTGA-CCTTCAACAGGT 37691 Query 112119 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166 | | ||||||||||||||| |||||| ||| || | ||| | |||| Sbjct 37692 ATGACCTCTCAAGGGTTTTGAAACCAAAATAATCATAGTCAAAATCCC 37739 >seq2381 Length=21385 Score = 86.0 bits (94), Expect = 8e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCC 122730 || || || || ||||| ||||| | || || |||||| ||| || ||||| | ||| Sbjct 13988 TGAAGCCCTTCGTCTCGAGAAATTAACTCGTTAGAGAAGGTTAGTCCAGGCATTAAACCA 14047 Query 122731 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 122790 ||||| |||| ||| | ||||||||||| || |||||||| || || || ||||| Sbjct 14048 CGCTTTTTCAGCCAGAATATAGCGCAGAAGCTTCCAGAGAAGAATATCCCTTCAACACAA 14107 Query 122791 GCAAACGCAA 122800 ||||| |||| Sbjct 14108 GCAAATGCAA 14117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 625616274912000