Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq407 105 8e-18 seq5880 104 3e-17 seq100015 86.0 8e-12 seq80314 84.2 3e-11 seq2381 84.2 3e-11 seq33024 82.4 9e-11 >seq407 Length=47313 Score = 105 bits (116), Expect = 8e-18 Identities = 247/369 (67%), Gaps = 8/369 (2%) Strand=Plus/Minus Query 14063 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 14122 || ||||| || ||||| | || || || ||||| || ||| | ||| || || Sbjct 36713 CGGTCAAAACGTCCTGGCCTCAGAAGAGCTGAATCAAGAATGTCAGCTCTGTTAGTTGCA 36654 Query 14123 GCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTGA 14179 || || || | | ||| || |||| |||||||||||||||||||| | || ||| Sbjct 36653 GCAATTACTATTACGCCAGT---GTTACCCTCAAAGCCATCCATCTCAGTGAGAAGCTGA 36597 Query 14180 TTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCACCCGCACTGCGTTGCTTACCG 14239 || | |||||||| | |||||||||| | | | || | || | ||| | || Sbjct 36596 TTAAGTGTTTGTTCCCTTTCATCATTCCCTCCCCCAATTCCAGTACCTCTTTGTCTCCCA 36537 Query 14240 ACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAAAG 14299 || || ||||||||||| | ||||| || ||||| |||||| || || |||| Sbjct 36536 ACAGCATCAATTTCATCAACAAAAACAATGCATGGAGCATTTTCTTTCGCCTTTTTAAAG 36477 Query 14300 ATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAA 14359 | ||| ||||||| ||||| || || ||||||||||| || || | | | ||| Sbjct 36476 AGATCACGCACTCGAGAAGCACCCACGCCAACAAACATCTCAACGAATTCTGAACCCGAA 36417 Query 14360 CATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCC 14418 || | || || || || | ||| || || || || || || |||||||| || Sbjct 36416 -ATGGAGAAAAATGGCACACCTGCTTCCCCTGCAATAGCCTTTGCCAGCAGGGTCTTTCC 36358 Query 14419 CGTCCCTGG 14427 |||||||| Sbjct 36357 TGTCCCTGG 36349 >seq5880 Length=12336 Score = 104 bits (114), Expect = 3e-17 Identities = 196/287 (68%), Gaps = 6/287 (2%) Strand=Plus/Plus Query 14063 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 14122 || ||||| || ||||| | || || || ||||| || ||| | ||| || || Sbjct 7760 CGGTCAAATCGTCCTGGCCTCAGCAGAGCAGAATCAAGAATGTCAGCTCTGTTAGTAGCA 7819 Query 14123 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 14182 || || |||| |||||| || | ||||| ||||||||||| || | || ||||| Sbjct 7820 GCAATTACAATGATGCCGGTATTACCCTCAAAACCATCCATCTCCGTGAGAAGCTGATTC 7879 Query 14183 ATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA---CCCGCACTGCGTTGCTTACCG 14239 | || ||||| | |||||||||| | |||| || | || | ||| | || Sbjct 7880 AACGTCTGTTCCCTTTCATCATTCCC---TCCACCAATTCCAGTACCTCTCTGCCTCCCC 7936 Query 14240 ACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAAAG 14299 || || || |||||||| | ||||| |||||||| |||||| || || ||| Sbjct 7937 ACTGCATCTATTTCATCAACAAAAACAATACATGGAGCATTTTCTTTTGCCTTTTTAAAT 7996 Query 14300 ATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 14346 | ||| ||||||| ||||| ||||| ||||||||||| ||||| Sbjct 7997 AGATCACGCACTCGAGATGCACCCACACCAACAAACATCTCTACAAA 8043 >seq100015 Length=1511 Score = 86.0 bits (94), Expect = 8e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 |||||||| || || || | || ||||||||| || |||||||| | || || ||| Sbjct 1249 CCCTCGTCTCGAGAAATCAACTCGTTCGAGAAGGTAAGCCCTGGCATTAACCCTCGTTTC 1308 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 || | ||| || ||||| || || ||||||||||| ||||| || ||||| ||||| Sbjct 1309 TTGAGCCAAAATATCGCGCAGAAGCTTCCAGAGAAGAATATCCCTTCAACACAAGCGAAA 1368 Query 130154 GCAAAGAGACGCTCAGCAAA 130173 || | | |||||||| || Sbjct 1369 GCGACAATTCGCTCAGCGAA 1388 >seq80314 Length=1716 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 130028 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 130087 || || || ||||| || || || | ||||| |||||| || || ||||| | ||| Sbjct 955 TGAAGCCCTTCGTCTCGAGAAATTAACTCATTAGAGAAGGTTAGTCCAGGCATTAAACCT 896 Query 130088 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 130147 ||||| |||| |||||| || ||||| || ||||||||||| | || || ||||| Sbjct 895 CGCTTTTTCAGCCAGAATATAGCACATAAACTTCCAGAGAAGAATACTCCTTCAACACAA 836 Query 130148 GCGAACGCAAAGAGACGCTCAGCAAA 130173 || || |||| | ||||| ||||| Sbjct 835 GCAAATGCAATTATTCGCTCTGCAAA 810 >seq2381 Length=21385 Score = 84.2 bits (92), Expect = 3e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 130028 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 130087 || || || ||||| || || || | || || |||||| || || ||||| | ||| Sbjct 13988 TGAAGCCCTTCGTCTCGAGAAATTAACTCGTTAGAGAAGGTTAGTCCAGGCATTAAACCA 14047 Query 130088 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 130147 ||||| |||| |||||| || || || || ||||||||||| ||||| || ||||| Sbjct 14048 CGCTTTTTCAGCCAGAATATAGCGCAGAAGCTTCCAGAGAAGAATATCCCTTCAACACAA 14107 Query 130148 GCGAACGCAAAGAGACGCTCAGCAAAGGA 130176 || || |||| | ||||| ||||| || Sbjct 14108 GCAAATGCAATTATTCGCTCTGCAAACGA 14136 >seq33024 Length=3557 Score = 82.4 bits (90), Expect = 9e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 |||||||| || || || | || ||||||||| || || ||||| | || || ||| Sbjct 1341 CCCTCGTCTCGAGAAATCAACTCGTTCGAGAAGGTAAGCCCCGGCATTAATCCTCGTTTC 1400 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 || | ||| || ||||| || || ||||||||||| ||||| || ||||| ||||| Sbjct 1401 TTGAGCCAAAATATCGCGCAGAAGCTTCCAGAGAAGAATATCCCTTCAACACAAGCGAAA 1460 Query 130154 GCAAAGAGACGCTCAGCAAA 130173 || | | |||||||| || Sbjct 1461 GCGACAATTCGCTCAGCGAA 1480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 616056389003200