Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq5880 141 1e-28 seq407 131 2e-25 seq100015 125 8e-24 seq33024 118 1e-21 seq2381 116 4e-21 seq80314 96.9 4e-15 >seq5880 Length=12336 Score = 141 bits (156), Expect = 1e-28 Identities = 329/492 (67%), Gaps = 8/492 (2%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 || ||||| || ||||| | || || || |||||| || ||| | | || || || Sbjct 7760 CGGTCAAATCGTCCTGGCCTCAGCAGAGCAGAATCAAGAATGTCAGCTCTGTTAGTAGCA 7819 Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 || || |||| || || || | | ||||||||||||||||| || | ||| || || Sbjct 7820 GCAATTACAATGATGCCGGTATTACCCTCAAAACCATCCATCTCCGTGAGAAGCTGATTC 7879 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9700 | || ||||||| |||||||||| || |||| |||| || | ||| | ||| Sbjct 7880 AACGTCTGTTCCCTTTCATCATTCCCT---CCACCAATTCCAGTACCTCTCTGCCTCCCC 7936 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAG 9760 || ||||| || ||||||| || || || ||||| |||||| || || ||| Sbjct 7937 ACTGCATCTATTTCATCAACAAAAACAATACATGGAGCATTTTCTTTTGCCTTTTTAAAT 7996 Query 9761 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9820 ||||| || || || || |||||||||||||||||||| ||||| | | | ||| Sbjct 7997 AGATCACGCACTCGAGATGCACCCACACCAACAAACATCTCTACAAATTCGGAACCAGAA 8056 Query 9821 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9879 || | || || || ||| || ||| || ||||| || || || | ||||| || Sbjct 8057 -ATGGAGAAAAATGGAACACCAGCTTCTCCAGCAATAGCCTTTGCAAGCAATGTCTTTCC 8115 Query 9880 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTA 9939 |||||||| |||| | || || ||||| || || || ||| | | | | Sbjct 8116 GGTACCTGGAGGACCCACAAGAAGAACACCTTTAGGGATGCGAGCTCCAACTGCTGTGAA 8175 Query 9940 TCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGCGGCGTCAAT 9999 |||||||| | ||||| || || |||| ||| || || | || || | |||| Sbjct 8176 CCTCTCAGGCTTTTTAAGGAACTCGACAACTTCCATGAAATCCTGCTTTGCTTCATCAAC 8235 Query 10000 CCCCTCAACATC 10011 ||| ||||||| Sbjct 8236 CCCAGCAACATC 8247 >seq407 Length=47313 Score = 131 bits (144), Expect = 2e-25 Identities = 324/489 (66%), Gaps = 2/489 (0%) Strand=Plus/Minus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 || ||||| || ||||| | || || || |||||| || ||| | | || || || Sbjct 36713 CGGTCAAAACGTCCTGGCCTCAGAAGAGCTGAATCAAGAATGTCAGCTCTGTTAGTTGCA 36654 Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 || || || | | || || | | ||||| ||||||||||| || | ||| || ||| Sbjct 36653 GCAATTACTATTACGCCAGTGTTACCCTCAAAGCCATCCATCTCAGTGAGAAGCTGATTA 36594 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACG 9703 | |||||||||| |||||||||| || | | |||| || | ||| | || || Sbjct 36593 AGTGTTTGTTCCCTTTCATCATTCCCTCCCCCAATTCCAGTACCTCTTTGTCTCCCAACA 36534 Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 9763 |||||||| ||||||| || || |||||||| |||||| || || ||||||| Sbjct 36533 GCATCAATTTCATCAACAAAAACAATGCATGGAGCATTTTCTTTCGCCTTTTTAAAGAGA 36474 Query 9764 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9823 || || || || || ||||| |||||||||||||| || || | || | ||| || Sbjct 36473 TCACGCACTCGAGAAGCACCCACGCCAACAAACATCTCAACGAATTCTGAACCCGAA-AT 36415 Query 9824 TG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9882 | || || || ||| | ||| || ||||| || || || || ||||| || || Sbjct 36414 GGAGAAAAATGGCACACCTGCTTCCCCTGCAATAGCCTTTGCCAGCAGGGTCTTTCCTGT 36355 Query 9883 ACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCT 9942 ||||| ||| | || || ||||| ||||| || ||| | | |||| Sbjct 36354 CCCTGGAGGACCAACAAGAAGAACACCTTTAGGAATGCGAGCTCCAACAGCTGTGAATCT 36295 Query 9943 CTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGCGGCGTCAATCCC 10002 || |||| ||||| || || || | ||| | || || | || || | |||| || Sbjct 36294 TTCGGGTTTTTTAAGGAATTCGACTACTTCCACGAAATCCTGCTTTGCTTCATCAACACC 36235 Query 10003 CTCAACATC 10011 ||||||| Sbjct 36234 GGCAACATC 36226 >seq100015 Length=1511 Score = 125 bits (138), Expect = 8e-24 Identities = 116/147 (79%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 || ||||||||| | |||| || || |||||||| || || ||||||||||| |||| Sbjct 1388 TTCGCTGAGCGAATTGTCGCTTTCGCTTGTGTTGAAGGGATATTCTTCTCTGGAAGCTTC 1329 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 ||||| || | |||||||||||| ||||| | |||||||| || |||||| |||||| Sbjct 1328 TGCGCGATATTTTGGCTCAAGAAACGAGGGTTAATGCCAGGGCTTACCTTCTCGAACGAG 1269 Query 94918 CTTATCTCTCGTGACGAGGGACTCCAC 94944 | || ||||| ||||||||| | ||| Sbjct 1268 TTGATTTCTCGAGACGAGGGATTACAC 1242 >seq33024 Length=3557 Score = 118 bits (130), Expect = 1e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 || ||||||||| | |||| || || |||||||| || || ||||||||||| |||| Sbjct 1480 TTCGCTGAGCGAATTGTCGCTTTCGCTTGTGTTGAAGGGATATTCTTCTCTGGAAGCTTC 1421 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 ||||| || | |||||||||||| ||||| | ||||| || || |||||| |||||| Sbjct 1420 TGCGCGATATTTTGGCTCAAGAAACGAGGATTAATGCCGGGGCTTACCTTCTCGAACGAG 1361 Query 94918 CTTATCTCTCGTGACGAGGG 94937 | || ||||| |||||||| Sbjct 1360 TTGATTTCTCGAGACGAGGG 1341 >seq2381 Length=21385 Score = 116 bits (128), Expect = 4e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 || ||||| |||||| | | |||||||| |||||||| || || ||||||||||| | Sbjct 14136 TCGTTTGCAGAGCGAATAATTGCATTTGCTTGTGTTGAAGGGATATTCTTCTCTGGAAGC 14077 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 ||||||||||| | ||||| || ||||| ||| | ||||| || || |||||| ||| Sbjct 14076 TTCTGCGCTATATTCTGGCTGAAAAAGCGTGGTTTAATGCCTGGACTAACCTTCTCTAAC 14017 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCA 94943 ||| | || ||||| ||||| || || || Sbjct 14016 GAGTTAATTTCTCGAGACGAAGGGCTTCA 13988 >seq80314 Length=1716 Score = 96.9 bits (106), Expect = 4e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 ||||| |||||| | | |||||||| |||||||| || | ||||||||||| || Sbjct 810 TTTGCAGAGCGAATAATTGCATTTGCTTGTGTTGAAGGAGTATTCTTCTCTGGAAGTTTA 869 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 || ||||| | ||||| || ||||||||| | ||||| || || |||||| || ||| Sbjct 870 TGTGCTATATTCTGGCTGAAAAAGCGAGGTTTAATGCCTGGACTAACCTTCTCTAATGAG 929 Query 94918 CTTATCTCTCGTGACGAGGGACTCCA 94943 | || ||||| ||||| || || || Sbjct 930 TTAATTTCTCGAGACGAAGGGCTTCA 955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581017287332800