Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq33024 140 4e-28 seq2381 120 3e-22 seq100015 111 2e-19 seq80314 105 7e-18 >seq33024 Length=3557 Score = 140 bits (154), Expect = 4e-28 Identities = 297/431 (69%), Gaps = 12/431 (3%) Strand=Plus/Minus Query 59688 CATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAAT 59747 |||||||||| || || ||||||||||| || ||| || |||||| |||| ||| Sbjct 1765 CATTTCATCACTCACGTGCTCGCCTTCTTCGCCGCATCTGACGGTATTGTGCTGGAGAAT 1706 Query 59748 ATAGACATGAACTTTTCC--AAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGT 59805 | | | || | |||| ||||| || || || | || || | | || |||| || Sbjct 1705 CTCG-CTTGT-CGTTTCATGAAGGAAGTTCAACTTCCTGAAGCGAGAGCATTTTACGGGT 1648 Query 59806 ATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTG 59864 ||| ||| | | ||| |||||| ||||| | |||||| || || || | | || Sbjct 1647 TTCAAATCGCT-ATCGAAAATATCCATTCCGAAATGTACTC-CTTATTATTGGAGACTTA 1590 Query 59865 G-TCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGT 59923 | |||||| |||| || || | ||| | |||||||| | ||||| |||||| || Sbjct 1589 CATTAAGGATTCGGAGGAAAAATCGGGTTTATTCCGTGCTGTTGAGACTATCCCCGCTGT 1530 Query 59924 TAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GA-GTCCTGGAGCATCATTTGCACAA 59981 || | || || || |||||| ||| ||||| || | | |||| | || || | Sbjct 1529 CAAGCGCAAGGCTGATTGGGCCTTGCGCTGGATCGACGGCGGGGAGAGT--TTCGCTGAG 1472 Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041 || | | ||||| || || || ||||| || ||||||||||| ||||| || || Sbjct 1471 CGAATTGTCGCTTTCGCTTGTGTTGAAGGGATATTCTTCTCTGGAAGCTTCTGCGCGATA 1412 Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101 || |||||||| || || || | |||||||| || | ||||| |||||| ||||||| Sbjct 1411 TTTTGGCTCAAGAAACGAGGATTAATGCCGGGGCTTACCTTCTCGAACGAGTTGATTTCT 1352 Query 60102 CGGGACGAGGG 60112 || |||||||| Sbjct 1351 CGAGACGAGGG 1341 >seq2381 Length=21385 Score = 120 bits (132), Expect = 3e-22 Identities = 306/456 (67%), Gaps = 10/456 (2%) Strand=Plus/Minus Query 59969 ATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTC 60028 ||| |||||| | || | || || ||||| || || ||||| || ||||||||||| Sbjct 14137 ATCGTTTGCAGAGCGAATAATTGCATTTGCTTGTGTTGAAGGGATATTCTTCTCTGGAAG 14078 Query 60029 GTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAA 60088 ||||| ||||| |||||||| ||||||||||| | ||||| || || | ||||| || Sbjct 14077 CTTCTGCGCTATATTCTGGCTGAAAAAGCGTGGTTTAATGCCTGGACTAACCTTCTCTAA 14018 Query 60089 CGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTCACA 60148 |||| | ||||| || ||||| || || ||| || || ||| | | || || Sbjct 14017 CGAGTTAATTTCTCGAGACGAAGGGCTTCATTGCGATTTCGCATGTTTGTTATACTC--- 13961 Query 60149 CCTATTGGA-AAAATGCCCTTCCAAG-GATATTCACAAGATTGTTCAGTGGGCTTGTGAA 60206 |||||| | || | | | | | | || | ||| ||| | | || | ||| | Sbjct 13960 TCTATTGAAGAAGAAGACGAGCGAGGAGAGAGTCAAAAGTATAATTTCTGAGGCGGTGGA 13901 Query 60207 G-TGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGG 60265 | | ||||| ||||| | || ||| | || || | | || ||| ||| || Sbjct 13900 GATCGAGAGGGAGTTTGTTTGTGACGCGTTACCGTGTGCGTTGGTTGGGATGAACG-GGG 13842 Query 60266 AG-AAATGACGCAGTACATTCAGTTTGTCGCGGACCGCCT-CATGGCCCAGTTTGGAGAA 60323 || |||| ||||| ||| ||||||| ||||| | | | ||| | ||| ||| Sbjct 13841 AGTTGATGAGTCAGTATATTGAGTTTGTTGCGGATAGGTTGCTTGGTGC-GTTGGGATGC 13783 Query 60324 GGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGG 60383 || ||||| || | ||||| || || ||||||||| || ||| || ||||| Sbjct 13782 GGGAAGGTTTACAATGTTACGAACCCGTTTGATTGGATGGAGTTAATATCGCTGCAAGGG 13723 Query 60384 AAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTAT 60419 ||||| || ||||| ||||||||||| ||||| ||| Sbjct 13722 AAGACTAATTTCTTCGAGAAGCGGGTTGGGGAGTAT 13687 >seq100015 Length=1511 Score = 111 bits (122), Expect = 2e-19 Identities = 175/247 (71%), Gaps = 4/247 (2%) Strand=Plus/Minus Query 59868 AAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAA 59927 |||||| |||| || || | ||| | |||||||| | ||||| |||||| || || Sbjct 1493 AAGGATTCGGAGGAAAAATCGGGTTTATTCCGTGCTGTTGAGACTATCCCCGCTGTCAAG 1434 Query 59928 CAAAAAGCAGAATGGGCCATGCAGTGGAT-GA-GTCCTGGAGCATCATTTGCACAACGTC 59985 | || || || |||||| ||| ||||| || | | |||| | || || | || Sbjct 1433 CGCAAGGCCGATTGGGCCTTGCGCTGGATTGATGGCGGGGAGAGT--TTCGCTGAGCGAA 1376 Query 59986 TCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCT 60045 | | ||||| || || || ||||| || ||||||||||| ||||| || || || | Sbjct 1375 TTGTCGCTTTCGCTTGTGTTGAAGGGATATTCTTCTCTGGAAGCTTCTGCGCGATATTTT 1316 Query 60046 GGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGG 60105 ||||||| || || || | ||||| || || | ||||| |||||| ||||||| || | Sbjct 1315 GGCTCAAGAAACGAGGGTTAATGCCAGGGCTTACCTTCTCGAACGAGTTGATTTCTCGAG 1256 Query 60106 ACGAGGG 60112 ||||||| Sbjct 1255 ACGAGGG 1249 >seq80314 Length=1716 Score = 105 bits (116), Expect = 7e-18 Identities = 165/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 59890 GTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGC 59949 ||||||| ||||| |||| ||| || || || || | || || || |||||| | | Sbjct 727 GTCTGTTTCGTGCTGTAGAAACGATTCCGGCTGTCAAGCGTAAGGCTGATTGGGCCTTAC 786 Query 59950 AGTGGATGAGTCCTGGAGCATCATT---TGCACAACGTCTCATAGCTTTTGCATGCGTGG 60006 ||||| | | || ||| ||| |||| | || | || || ||||| || || | Sbjct 787 GTTGGATT-GAC--GGGTCATAATTGTTTGCAGAGCGAATAATTGCATTTGCTTGTGTTG 843 Query 60007 AAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCA 60066 ||||| | ||||||||||| || |||||||| |||||||| |||||||| || | | Sbjct 844 AAGGAGTATTCTTCTCTGGAAGTTTATGTGCTATATTCTGGCTGAAAAAGCGAGGTTTAA 903 Query 60067 TGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCAT 60119 |||| || || | ||||| || ||| | ||||| || ||||| || || ||| Sbjct 904 TGCCTGGACTAACCTTCTCTAATGAGTTAATTTCTCGAGACGAAGGGCTTCAT 956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546414899356800